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Information for unigene UN11480
| FASTA Sequence |
| Unigene ID: UN11480 | Length: 960 |
| SNP | GGGATTCCCACCTTCTCATCGGTCGCGAAGAAGCTCTCAGCTTAGGGATTTTTTTTTTCGAATTCTTACAGCGATGGATCTAAATC
TGGATGCGCCGCACTCTATGGGGACGACAATCATCGGCGTCACTTACAATGGAGGTGTCGTTCTCGGAGCTGACTCACGTACCAGC
ACCGGGATGTACGTAGCGAATCGGGCTTCAGACAAGATCACACAACTCACAGACAATGTCTACGTCTGTCGTTCCGGTTCGGCTGC
TGATTCTCAGGTTGTCTCTGACTATGTCCGCTACTTCCTTCACCAGCACACGATTCAGCTGGGGCAGCCTGCAACCGTGAAGGTTT
CTGCCAACCTTATCAGGATGCTCGCATACAATAACAAGAACATGCTCCAAACCGGTCTCATTGTTGGTGGCTGGGACAAATACGAA
GGTGGGAAGATCTATGGGATTCCTCTCGGTGGAACTGTAGTGGAGCAACCGTTTGCTATTGGAGGCTCTGGCTCGAGTTACCTTTA
CGGTTTCTTTGATCAAGCATGGAAAGAAAACATGACCAAAGAAGAAGCCGAGCAACTTGTTGTGAAGGCGGTTTCACTAGCCATAG
CCCGTGATGGAGCCAGTGGAGGGGTTGTACGGACTGTCATAATAAACTCAGAGGGAGTGACCAGAAACTTCTATCCTGGTGATAAG
TTGCAGCTTTGGCACGAGGAGTTGGAGCCACAGAACTCTTTGTTAGACATCTTGAACGCTGCTGGTCCTGAGCCAATGGCCATATG
ATGCGAACAAACGATCATTCTCTTACTCTGTTAAACAAACTTGTTTTAGATGTTTGATTACATTTACCGATGTTTTACTCTAAACC
CTGTGTGAAGTTAGGTTGGATTGACTCAATGGCTCTTTTAAATGGTTATCGTGTTTGTTATGGTTAAGACTTTAATTCCTCTTTTC
TGGTGAGTTGGTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_194858 proteasome subunit beta type-6 [Arabidopsis thaliana] | 1190 | 2e-128 |
| AAM64316 multicatalytic endopeptidase complex, proteasome precursor, beta subunit [Arabidopsis thaliana] | 1131 | 2e-121 |
| XP_002527995 proteasome subunit beta type 6,9, putative [Ricinus communis] | 1119 | 4e-120 |
| XP_002283195 PREDICTED: hypothetical protein [Vitis vinifera] | 1091 | 7e-117 |
| XP_002266488 PREDICTED: hypothetical protein [Vitis vinifera] | 1074 | 7e-115 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LD27 Proteasome subunit beta type-6 | 1190 | 1e-129 |
| P93395 Proteasome subunit beta type-6 | 1037 | 6e-112 |
| Q55GJ6 Proteasome subunit beta type-6 | 602 | 2e-061 |
| O43063 Probable proteasome subunit beta type-6 | 567 | 2e-057 |
| Q3MHN0 Proteasome subunit beta type-6 | 558 | 2e-056 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SPS6 Proteasome subunit beta type | 1119 | 3e-120 |
| B7FGZ8 Proteasome subunit beta type | 1060 | 2e-113 |
| C6SVE5 Proteasome subunit beta type | 1060 | 2e-113 |
| A9PD83 Proteasome subunit beta type | 1052 | 2e-112 |
| B9HBA5 Proteasome subunit beta type | 1052 | 2e-112 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G31300.1 PBA1; endopeptidase/ peptidase/ threonine-type endopeptidase | 1191 | 7e-131 |
| AT4G31300.2 PBA1; endopeptidase/ peptidase/ threonine-type endopeptidase | 1179 | 2e-129 |
| AT5G40580.1 PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase | 272 | 3e-024 |
| AT5G40580.2 PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase | 272 | 3e-024 |
| AT3G27430.1 PBB1; endopeptidase/ peptidase/ threonine-type endopeptidase | 268 | 8e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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