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Information for unigene UN11485
| FASTA Sequence |
| Unigene ID: UN11485 | Length: 1280 |
SSR | | GTTTCTCAAGTGGATTGTCACCAAGTCTCCTGGTTCTAGTATGAGCCCTCGTCTGCCCTTGTTGGCGAATCTTGCATACTCTTTGG
TCCTCTCCTCAATATTCTTCTTAACCTGCTCATGAAAAGAAACAACAAACTCGGCCTTGGCCTTTCCATCAAGATTAATCTGCTCT
TTGTATGGTATAGGTAACAAATCAAGAGGAGTCAAAGGATTAAACCCATAAACTATCTGAAAAGGTGAGAACTTAGTAGCTCGGTG
GACAGAGTGATTATAAGCAAACTCAACATGAGGCAAACAATCTTCCCAAGTCTTAATATTCTTTTTAATCACAGCACGCAAGAGAG
TAGCCAAGGTCCTATTAACTACTTCAGTTTGCCCATCAGTTTGTGGGTGACAAGTAGTAGAAAACATCAGCTTAGTTTCTAGCTTA
GACCAAAGAGTTTTCCAGAAATAACTCAAGAACTTGGTATCTCTATCAGAAACAATACTCCTAGGCATGCCATGAAGTCTAACCAC
TTCTTTAAAGAACAAATCAGCAATGTTGAGAGCATTATCAGTTTTGTGGCAAGCAATGAAGTGAGCCATCTTAGAAAACAATCTTC
TTCGTCTTCTCCACTCTTATTCTCTTTCTCTCTCTGACACAACAACTACTTATCCTTACTGCATTCCTCTCTCTCCACACACACAC
AAACAAACAAAGCCACTTACTAAAGAAGATGTCGAGCAGAAGATCATCACGTTCACGACAGTCAGGAAGCTCAAGAATCTCTGATG
ATCAGATTACCGATCTTGTTACTAAGCTCCAACACCTCATCCCTGAGCTCCGACGCCGCCGTTCTGACAAGGTGTCAGCATCTAAA
GTGCTACAGGAGACTTGCAACTACATCAGGAACTTACACAGAGAGGTTGATGATCTCAGTGACCGTTTGTCGGAACTTTTGGCTTC
AACGGACGACGACAGCGCCGAGGCAGCCATCATTAGGAGCTTTGCTTAATTTACTAAAATTTCTCACTAATTTAATCTGAGATATA
AATCATCGATTTTCCGCCACGAAAATTTTATCTTATTATGATTATGAGTATTTTGTTTTCCTTTCTACTTTCAAATATTATGATAT
AGCTAGGGTTTTCGGGTCATTTGTTAGGCCAACTCATATATTATATAATGTATGGTTTTATGTATGTATGCATCGTAATTTGTAAG
TGAGGGTCCAGACCCTGGCTGTATAGTAGCCTGTGTATTATCATGAGATCCTCTCTAATATTATGATTAATGACAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAF79348 F15O4.13 [Arabidopsis thaliana] | 859 | 9e-090 |
| AAK51582 Putative retroelement [Oryza sativa Japonica Group] | 748 | 7e-077 |
| AAT85159 unknown protein [Oryza sativa Japonica Group] | 746 | 1e-076 |
| ABE60891 putative polyprotein [Oryza sativa Japonica Group] | 746 | 1e-076 |
| NP_001063540 Os09g0491900 [Oryza sativa Japonica Group] | 741 | 4e-076 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein | 309 | 2e-027 |
| Q9CA64 Transcription factor bHLH135 | 306 | 5e-027 |
| Q99315 Transposon Ty3-G Gag-Pol polyprotein | 305 | 7e-027 |
| Q05654 Retrotransposable element Tf2 155 kDa protein type 1 | 270 | 7e-023 |
| Q9C0R2 Retrotransposable element Tf2 155 kDa protein type 2 | 270 | 7e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LQH2 F15O4.13 | 859 | 6e-090 |
| Q7XG23 Retrotransposon protein, putative, Ty3-gypsy subclass | 748 | 4e-077 |
| Q94I07 Putative retroelement | 748 | 4e-077 |
| A4K7M3 Putative polyprotein | 746 | 8e-077 |
| Q6ATA5 Putative polyprotein | 746 | 8e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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