 |
Information for unigene UN11506
| FASTA Sequence |
| Unigene ID: UN11506 | Length: 859 |
SSR | | GGGGGGCTTCCACCTGATAGGAACAGTCTCAACAAGCTAATGGCCTTGCGCAATAACAACAACAACAACATGAACAACGGTCAGGG
CTCTGCACAAGCTGCCGCCTTTGCTCTTACCAACTACCAGACCATGCTAATGAAACAGAATCACCCGGAGCAAACCACCAGCGGCG
GACTACTACAACAAGAATCATCAAGAAACATGAGCCCATCTCCGAGCTATAATGGAGCTGCTGCTGGTTCTTTGTTGACTGGTTTT
GCGCAGAGCCCATCGATGAGCGGTGTTTCTTCTCCTCAGAGGCAAATGCCAAGCTCCAGTTATAATAGCTCAGCTCATCAGCAATA
CCAACAACCTTCCTGTAGTGGCAGTAACCAAGCGATGGAACAACAACAGCTGATTCACCAGATATGGCAACAGATGGCAAACACCA
ACGGTGGCTCCGGGCAGCAGCAGTCGCTCTCTGGTCAGAACATGGGAAGAAACAGAACAGATTATGTGCCCACAGCGGAAACGCCA
AGCAGTTCCAACAGGTTCAGAGGCATGAAAGGGCTAGACCAGAGCCAGAGCCAGAACCAGGAAGCTATGGTCTCTTCTAACAACAC
ATCATCACTCAACTTTGGTGATAACAACGGTTTCTTTAGCAATGGGGTTGATGAAAGCATGGAGTATCCTTGGAAGCATGATGAGG
AGGAGAAGTTGGTAGTTTAGTCTATGTTTGTCTTTTGTAAGAACTGAGAGTACTAAAGACTTAGAGACATCTTTAGTTATGTGATC
TCTTGAGAGAGTCTCATCAAATGTTACCTTTGTCCACCTGGTGGTGTTGCTGAACTCTTAGAGAAAAGCCTCTGTTTTTATGAGG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB10171 unnamed protein product [Arabidopsis thaliana] | 685 | 7e-070 |
| NP_201015 protein SEUSS-like 2 [Arabidopsis thaliana] | 685 | 7e-070 |
| XP_002866470 hypothetical protein ARALYDRAFT_919461 [Arabidopsis lyrata subsp. lyrata] | 666 | 1e-067 |
| XP_002510837 Transcriptional corepressor SEUSS, putative [Ricinus communis] | 259 | 2e-020 |
| XP_001954159 GF16888 [Drosophila ananassae] | 134 | 5e-006 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94BP0 Putative uncharacterized protein At5g62090 | 685 | 5e-070 |
| Q9FIS9 Genomic DNA, chromosome 5, P1 clone:MTG10 | 685 | 5e-070 |
| B9R9G2 Transcriptional corepressor SEUSS, putative | 308 | 3e-026 |
| Q9ZSM7 Putative uncharacterized protein (Fragment) | 268 | 1e-021 |
| B3LWT2 GF16888 | 134 | 4e-006 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G62090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species: Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source: NCBI BLink). | 685 | 3e-072 |
| AT5G62090.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species: Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source: NCBI BLink). | 685 | 3e-072 |
| AT4G25520.1 SLK1 (SEUSS-LIKE 1); transcription regulator | 220 | 2e-018 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
