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Information for unigene UN11548
| FASTA Sequence |
| Unigene ID: UN11548 | Length: 1243 |
SSR | | GGGGACTCTCTCTCTCTCTCTCTCGCAATCCAATCCTTTTGTGCCTCTTTATAATCCAACACAATAAAAATGTCCAATATCCAACC
TGAGGATCCTGCACCCTACATGAACCATGTTGGTGATCAAATGCAAGAGGCTCATGACGGCTTAGATGATGGTTTTCATGGGGATG
CATGGGACTCTGATGTCGACGAGTTTGACTACTCTAACAACAAAATAGGTGATACTTCAGCTGCTCAAGCTCGGAAAGGGAAAGAC
ATCCAGGGCATTCCTTGGGGCAGGCTCATCATTACCAGAGACCAATACAGACAAACTAGATTTGAACAGTACAGAAACTATGAAAA
TGTCCCTACTTCTGGTGATTCCTCCAAGAAAGATTGCATGGTCACACAGAAAGGGGCTCTTTTTTATGATTTCTGGCGGAACTCAA
GATCTATCAAATCAAGTATTATTCATTTCCAGTTGAGAAATTTGGTATGGGCAACATCTAAGCATGATGTCTACCTTATGTCAAAT
TTTTTGGTGAACCACTATTCTACTTTGACATCTCGAAAGCATGAAGTTCTCAATGTTCAAGGTCATGTTTCCCCTTCCGAGAAACA
TCCTGGAAGTTTGTTGGAGGGATTTACAAAGACTCAAGTGAGTACACTTGCTGTGAAAGATAAATTTTTAGTTGCTGGTGGATTCC
AAGGAGAAATAATATGCAAGCATCTTGATAGACCTGGTGTGAGCTTTTGCTGGAGGACAACTTATGATGATAATGCTATCACTAAT
GCTATTGAGATCTATAACAAACCCAGTGGTGCGCTTCATTTCACAGCCTCAAATAATGATTGTGGACTCAGAGATTTTGATATGGA
GAGATATCAGCTTGTTAACTATATTCGCTTTCCTTGGCCAGTCAATCACACATCTCTGAGTCCTGATGGTAAACTATTGACGATTG
TGGGAGACAACCCCGAGGGCCTTCTCGTAGACCCCAACACTGGAAAGACACTGGGAACGGTAGCAGGACACTTGGACTTCTCCTTT
GCATCGGCATGGCACCCGGATGGTGTCACTTTCTCCACAGGTAACCAAGACAAGACCTGCCGGGTTTGGGACGTTCGTAACCTGTC
TAAATCTGTTGCTGTCCTGAGGGTAACCTTGGTGCAATCCGTTCCATCCGCTACACATCTGATGGGAAGTACATGGCCATGGCTGA
GCAGCTGACTTTGTCATGTCTACGATGTCTCAAATGGGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894518 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | 1650 | 2e-181 |
| NP_564699 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | 1647 | 4e-181 |
| XP_002882817 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | 1622 | 3e-178 |
| NP_566453 transducin/WD40 domain-containing protein [Arabidopsis thaliana] | 1600 | 1e-175 |
| XP_002330572 predicted protein [Populus trichocarpa] | 1429 | 7e-156 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O74855 Uncharacterized WD repeat-containing protein C18.05c | 139 | 1e-007 |
| Q8YTC2 Uncharacterized WD repeat-containing protein alr2800 | 133 | 5e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C5N4 Putative uncharacterized protein At1g55680 | 1647 | 2e-181 |
| Q94AB4 AT3g13340/MDC11_13 | 1600 | 7e-176 |
| B9N5K3 Predicted protein | 1429 | 5e-156 |
| B9GHK2 Predicted protein | 1413 | 3e-154 |
| B9SGX2 WD-repeat protein, putative | 1356 | 1e-147 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55680.1 WD-40 repeat family protein | 1647 | 1e-183 |
| AT3G13340.1 WD-40 repeat family protein | 1600 | 4e-178 |
| AT5G56190.1 WD-40 repeat family protein | 1315 | 4e-145 |
| AT5G56190.2 WD-40 repeat family protein | 1315 | 4e-145 |
| AT1G78070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 923 | 1e-099 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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