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Information for unigene UN11560
| FASTA Sequence |
| Unigene ID: UN11560 | Length: 1295 |
SSR | | GGAGAGAGAGAGAGGGGTCCATTACAACAGTGCGGCATTTCTCGACCAGAGAGAGAGAGAACAGAAAGCTTTGAGATTTTTTTTTA
TCACAGAGATGGTTTCAAAGACATAAATTTTCGTTAAAGACAAGGGATAATGAGTTGTAGGAGAGTGCTGAAGTCGATACAAGCCT
TGTCGGCTCATACTTTACTCTTCTGTTTCACCCTCTTCTTGGTTCTTAAGCTCGATCACACCCTCTCCTCCTCATGGTGGATGGTA
TTTTTGCCGCTGTGGGGTTTTCATGCAGTGGTTGCAAGAGGAAGGTTCTCCCTTCCTGCTCCTGTTGCTCCCCGTAACCGTCATTG
GGCTCCATGTCATGCTGTTGTAGCCACACCTTTGCTTGCAGCATTCGAATTGCTCCTATGTATATACCTCGAGGGTTCTTATGGTG
GGATTTATTTATAAATATTGGAATTGCCGAGTGCTTTGCTTTTCTTGTCTGTACAAAATGGTCCAACCCCGTGATCCATAGAAGCT
CACGTGCCGCAAGAGAAACGGGGTCGTCTTCTTCCACTGTAAGATATCTTGACTGGAACAGTGGCCTCGTAGCTGCCCCAGAAGAG
GATAGGCACCAAGATAGGTTCTGTAGTCTACAAGATATCGGTGGTCACATGTTGAAGATTCCCGTCATTGTTTTTCAAGTTGTCCT
TTGCATGCATCTAGAGGGGACTCCTGAGAGAGCTAAGGATATATCACTCCCAGTCTTGTTTTCTCCACTTTTCTTACTGCAAGGCC
TTGGTGTCCTCTTTGCTGCATCTAAACTAATAGAGAAGATCGTCGCCTTACTACGTGGGGAAGCTGGACCAGTATTCTATTTTAGA
TCTTCATCAAGAGCACACGATTGCTTGGGTTTCTTGCACCATGGTTTTAGGCTATTAGGTTGGTGGTCCATTGATGAAGGAAGCAG
GGAGGAACAATCTCGACTTTACATTGATGGAGAATCTGGTTACAATACCTTCAGTGGTCATCCTCCTGAGATAGTCGAGAAAATGC
CAAAGGAAGATTTGCTGAAGAGGTGTGGAGACTTCAAGCCGCACTTGGTGAACAAACCGAGATTACAAAATTCAGCCAGCAAGAGT
ATGAAAGGCTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGGAAGAGAAATCAGTTTGGTACTGCTTCCATGTAGACACCGT
GTTCTCTGCAGTCTCTGTTCAGACATACTCTCTCTTACATTAGTTGTAACATACAACGTTTGTATAAATATCAGTCTCTCCCTTTT
TTTCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002893002 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1001 | 3e-106 |
| NP_973857 Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana] | 996 | 1e-105 |
| NP_564052 Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana] | 996 | 1e-105 |
| AAW81737 Putative finger family protein [Brassica oleracea] | 976 | 2e-103 |
| XP_002888953 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 887 | 5e-093 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3E7H8 Putative uncharacterized protein At1g18470 | 996 | 8e-106 |
| Q8LBF1 At1g18470 | 996 | 8e-106 |
| Q5FAL9 Putative finger family protein | 976 | 2e-103 |
| B9RE37 X-linked inhibitor of apoptosis protein, xiap, putative | 875 | 9e-092 |
| Q9LPR2 F15H18.5 | 833 | 6e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G18470.1 zinc finger (C3HC4-type RING finger) family protein | 996 | 4e-108 |
| AT1G18470.2 zinc finger (C3HC4-type RING finger) family protein | 996 | 4e-108 |
| AT1G73950.1 zinc finger (C3HC4-type RING finger) family protein | 885 | 3e-095 |
| AT1G68820.1 membrane protein, putative | 654 | 2e-068 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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