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Information for unigene UN11566
| FASTA Sequence |
| Unigene ID: UN11566 | Length: 910 |
SSR | | GTTATGAAGGAGGCAATGGAGTAGGAGGAGGAGGAGGAAACTCGTCCTTCTTCAGTTCGGTTACAAGTAACCTATGGGGAAACAAC
GGTGGTCTTAACTATAACAACAACAACAACAACAACAACAACGCTACAAACTCAAACTTAAACTCCAATACATACATGGTAGGAGG
AGGAGGATCAACAAGTGGGAACAACACTCTTAGCGGTCCATTTGGAAACTGGGGTGCTCCTGGAGGAGGTGGAAACAATGCTGTTG
TTGGTAGTAACGAGAATGTGAAGTTTGGTTACGGAGGAAACGGTGAGTCTGGCTTTGGGTTGGGAGCAGGTGGATATGCAGCGAGG
AACATAGGGCCTCCTAGCAAGGCGGCGGCAGCGCCGTCGTCTTCTTCATTCTCTTCTGCCTCGGCTGCCAATAACAACATTGGTTA
CGATGGAGCAGGACTTGCAGAGTTTTATGGGAATGGTGCGGTGTATAGTGATCCCACGTGGAGATCACCGACGCCTGAGACGGAAG
GGCCTGCTTCTTTTAGCTATGGGATTGGAGGAGGAGAGGAGGTCCTTCCTCTGATGTTTCAGGTAGAAGTTCATCTCCAGGTTATG
TTGGCAGTTACAGTGTGGACAAGAGACAACCAAACAGAGGCGAGCCATCAAGGTGAACGATCTGGAATCTCTTAGATTTATCTTCA
TACAAAGCAAAGCCCATGAGGACAAAAACTTTGATCATATCATCATCATCAGCTTAGAGCTAACCAGAAAAAAAATCCCTCATGGT
TTGGTTTTCTAAATTCATTGGTCCTCCTCCCTCTTCATAGGCTTTTTCTTTTCTGCTTTATTTTTTTTTCTTTCAACGAGGGACGG
TAGAAACTGTGTCAAGTCTCCGGCGAGGCAGTAATACATAAGAAGAGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_850539 RNA recognition motif-containing protein [Arabidopsis thaliana] | 684 | 1e-069 |
| AAF21191 putative RNA-binding protein [Arabidopsis thaliana] | 684 | 1e-069 |
| NP_566321 RNA recognition motif-containing protein [Arabidopsis thaliana] | 684 | 1e-069 |
| AAK92717 putative RNA-binding protein [Arabidopsis thaliana] | 684 | 1e-069 |
| XP_002882552 hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp. lyrata] | 674 | 1e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9NL38 N66 matrix protein | 160 | 3e-010 |
| Q54UA9 Probable serine/threonine-protein kinase clkA | 140 | 5e-008 |
| Q54RP6 Hybrid signal transduction histidine kinase L | 134 | 3e-007 |
| Q54XG7 Basic-leucine zipper transcription factor A | 132 | 5e-007 |
| Q6XHA7 Probable serine/threonine-protein kinase roco9 | 131 | 6e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W555 AT3g07810/F17A17_15 | 684 | 7e-070 |
| Q94A00 Putative RNA-binding protein | 684 | 7e-070 |
| Q9SFD3 Putative RNA-binding protein | 684 | 7e-070 |
| B8H818 Putative uncharacterized protein | 192 | 8e-013 |
| Q2HH46 Putative uncharacterized protein | 170 | 3e-010 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07810.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 684 | 4e-072 |
| AT3G07810.2 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 684 | 4e-072 |
| AT3G18810.1 protein kinase family protein | 144 | 2e-009 |
| AT4G36230.1 unknown protein | 139 | 6e-009 |
| AT2G32690.4 GRP23 (GLYCINE-RICH PROTEIN 23) | 127 | 2e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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