RadishBase

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Information for unigene UN11581

FASTA Sequence

Unigene ID: UN11581	Length: 756	SSR
GGAGGGTTTTACCGAGGAGCGGCCGAGAGAGAGAGAGAGTGAGAGAGAGATGGGGAAGAGCGAGAAGACGACGCTAGGGAGATCAC TGGTAAAGCACCACAACCATATGATTCAAGAATCGAAAGACAAAGGAAAGTACTACAAGAATCTCCAGAATAAGGTTCTCGAATCC GTCACCGAGGTCAGCGACATCGACGCCATCATCGAGCAAGCCGAGGAGGCCGAGCGTCTTTTCGCCATCAATCACAGCAACACCAC TCCTTTGCCCATCAATCTAGATACGAGTTCCAGCTCAAGTACTATAGCAGCTGAAGAATGGAGAGAGCAGCAGAAGATAGAGGAGG CTTTACACGCCAGTAGTCTTCAAGTTCCTCGAAGACCTCCGTGGACACCAGAAATGTCAGTGGAGGAACTTGGTGCTAATGAAAAA CAAGCTTTTCTGAATTGGCGTCGGATGCTTGTCAGGCTAGAGGAAAATGAAAAGCTTGTGTTGACTCCTTTCGAAAAGAACCTTGA CATCTGGAGACAGCTTTGGCGAGTGCTTGAACGTAGTGATTTGATTGTTATGGTAGTTGATGCTAGAGATCCACTGTTTTACCGTT GCCCTGATCTTGAGGCATATGCTCGAGAGATTGACGAGCATAAGAAAATCATGCTTCTAGTTAACAAAGGCGGATCTTTTACCTCC TTATGTCAGGAGAAATGGGCAGAATATTTTCGCCTTAACAACATCCTCTTCGTCTTCTGGTCGGCCAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172317 P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	1107	6e-119
XP_002889691 GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]	1106	8e-119
BAF00519 hypothetical protein [Arabidopsis thaliana]	1103	2e-118
NP_180288 P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	991	2e-105
XP_002879073 GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]	990	2e-105

Swiss-Prot top hits (Blast detail)	Score	e value
Q6NY89 Large subunit GTPase 1 homolog	463	1e-045
Q9H089 Large subunit GTPase 1 homolog	445	2e-043
Q2YDM7 Large subunit GTPase 1 homolog	443	3e-043
Q4R8L2 Large subunit GTPase 1 homolog	439	9e-043
Q5BJT6 Large subunit GTPase 1 homolog	431	7e-042

TrEMBL top hits (Blast detail)	Score	e value
Q9SJF1 At1g08410	1107	4e-119
Q0WQT0 Putative uncharacterized protein At1g08410	1103	1e-118
Q9SHS8 At2g27200	991	1e-105
B9RJ08 GTP binding protein, putative	854	1e-089
B9HQ69 Predicted protein	818	1e-085

Arabidopsis top hits (Blast detail)	Score	e value
AT1G08410.1 GTP-binding family protein	1107	3e-121
AT2G27200.1 GTP-binding family protein	991	8e-108
AT1G52980.1 GTP-binding family protein	135	1e-008
AT3G07050.1 GTP-binding family protein	133	2e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			50%


6	1			50%

Unigene Members	Member information