 |
Information for unigene UN11590
| FASTA Sequence |
| Unigene ID: UN11590 | Length: 1317 |
SSR | | GGATCTGCTGCTGTTACAACCTTAACTTTGATCCTGTCTGGTCAACCATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTT
CAGGGTTTCACTGAGTTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCCTTCGGCAAGAAACTTTCTTCCGATTAGTTTGTTTC
CGCTGTCTCTTTCCAGACTTCTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTCACCGAGGCTAAACTTAAAGTGGCCATCA
ATGGATTCGGTAGGATAGGGAGGAACTTCTTGAGATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGTCATTAACGAC
ACCGGCGGTGTCAAGCAGGCTTCTCATCTCCTTAAGTACGACTCAACTCTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGA
CGCTGCCCTCTCTGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTCTTCCCTGGAAGGAGTTAGGAATCG
ACATTGTCATTGAAGGAACGGGAGTGTTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCTAAGAAGGTTATCATT
ACTGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTGGTGTCAATGCCGATGCTTACAACCCCGACGAGCCGATCATCAGCAA
TGCATCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAGAAGTTTGGTATCATAAAGGGTACAATGACAACCA
CTCACTCCTACACCGGTGACCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAGGAGAGCAAGAGCAGCTGCTTTAAACATTGTT
CCCACATCTACGGGAGCAGCTAAAGCAGTGGCTCTCGTGCTCCCTAACCTCAAAGGAAAACTCAACGGGATCGCTCTCCGTGTACC
GACACCGAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTCACCAAGAAGACTTTCGCTGAGGAAGTTAACGCTGCTTTTAGAGACT
CCGCAGAGAAGGAGCTTAAAGGTATCCTTGAAGTCTGCGATGAGCCGCTCGTGTCAGTTGATTTCAGATGCTCGGATGTGTCGTCC
ACCATTGATTCTTCACTCACTATGGTGATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACA
GAGAGTTGTTGATTTGGCTGACATTGTTGCCAACAACTGGAAGTGATATGTATTGAAATCAAAACTTTTTATAACAGGTCTCAAAA
CAATGATAATAATAATAATAATAATAC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ34149 unnamed protein product [Thellungiella halophila] | 1982 | 5e-220 |
| NP_566796 glyceraldehyde-3-phosphate dehydrogenase A [Arabidopsis thaliana] | 1921 | 7e-213 |
| XP_002875330 gapa [Arabidopsis lyrata subsp. lyrata] | 1921 | 7e-213 |
| AAA32793 glyceraldehyde 3-phosphate dehydrogenase [Arabidopsis thaliana] | 1918 | 1e-212 |
| XP_002892719 GAPA-2 [Arabidopsis lyrata subsp. lyrata] | 1886 | 7e-209 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P25856 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 1921 | 3e-214 |
| P12858 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 1752 | 1e-194 |
| P09315 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 1740 | 3e-193 |
| P19866 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 1692 | 1e-187 |
| P09043 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) | 1678 | 4e-186 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LPW0 At1g12900 | 1872 | 2e-207 |
| A9PI59 Putative uncharacterized protein | 1824 | 8e-202 |
| A9PK22 Putative uncharacterized protein | 1824 | 8e-202 |
| B9IA33 Predicted protein | 1823 | 1e-201 |
| B9RGT1 Glyceraldehyde 3-phosphate dehydrogenase, putative | 1822 | 1e-201 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G26650.1 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding | 1922 | 2e-215 |
| AT1G12900.1 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 1878 | 2e-210 |
| AT1G12900.3 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 1698 | 2e-189 |
| AT1G42970.1 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase | 1411 | 3e-156 |
| AT1G12900.2 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 1211 | 5e-133 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
