RadishBase

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Information for unigene UN11621

FASTA Sequence

Unigene ID: UN11621	Length: 1925	SSR
TTTGAGATCAGTTTCATTTACTTTTGCAAGGAAAGCGGTTTTGAGTTTTGGGTTGTGGACATAATGGGAAAGCCTGCAAGGTGGTT AAAAAGTGTATTACTTGGAAAGAAATCATCTAAATCTAGTGGTTCTAAAGACAAGGAGAGAGCTGTGAATGGAAAAGAGGTAGTGG TTGTTTCAAAGATTGAAGAATCCGATGTGGTTTCGGATCTTCCATCCTTTGGAAATGCAACAGTTTCCACCAGTGCTGCGGTAGAG GCACAGAAGATAGAAGAACATGAGGTGGTTTCAGACGACGAGATACAGATTCCTGAGAGCCGAGCTCAACCAACAGATTCTCCAAC CGCGGCTTCTCTTATACCTGATGATTCTCTATCGGATTCAGACAAAATTCAGCAAGAGATTGCAGCAACAACTCTGCAGGCTGCCT TTAGAGGCTACTTGGCTCGACGTGCCTTCTGGGCATTAAAAGGTATAATAAGGTTACAGGCGGTTATCCGCGGCCACATGGGTTAG AAGGCAAGCTGTTGCGACTCTGTGCTGTGTTATGGGGGATTGTCAGATTGCAAGCACTTGCTCGAGGAAGTGAGATCAGACGTTCT GACATTGGGTGTTGAAGTTCATAGGAGACGCCTGTTGAATCACCACCATTTGGAGAATAAACTCCCTGAAGACTCTGTTGTTGAAA CACATACTTATCTTGGAATCAAGAAGCTAACTGCAAATGCTTTTGCTCAGAAGCTTCTAGCTTCATCACCAAACGTGATGCCTGTG CACTTAGACAATGGCTATTCCAATTCAATCTGGTTAGAGAACTGGTCAGCCTCTTGCTTCTGGAAACCAGTTCCTCAACCGAAGAA AACATCGGTCAGGACAACCCCTCTGCTGCTGCTTCTGCACAGACGTCCTTTGAGTTTGAGAAACCAAAACGCAGCAGCTTCCGCAA ATTTTCAACAAGCCAATCTGTAGAACTACCACCACTAGAAGAGCCTCCTCAAGTTGATCTAGAGAAGGTGAAACGTGGCTTGAGGA AAGTGCATAACCCTGTAGTTGAGAGCTCTATCCAACCTCAACCATCTCCAGAAAAGCTGGAGATTGAGAATCCAGCTCTAGCTTTA GAACAACCTGTGAGTGTCTTTGCTGAAGAAGAAAAGGATGAAACGGCTGAGACTGTGGTGGAGATAGTACACACTCATGGACCACT GGAGACCAATGAAGCACCTGATTCTCCATTGGTGATAGAGAGCCAAGAAAATGTAATGGCTGAGGAGAAGGAGGAGGATGTGAAAG AAGAGAGAACTCCCAAACAAAAGAACTCAGCTGGGAAGGAGAATAAAAAATCAAGGAAGAAGGATTCTCCGGTTACTACTACTACT ACTACTACTACTACTACTACTCAAGCTGCTGAGTGTCAAGAGAGTAGTGATGTGAATCAGAGTAGTACCCCGGGGCTACCAAGCTA TATGCAAGCGACTAAATCCGCAAAAGCAAAGCTGAGACTACAACAAGGCTCTTCTTCTCCTAAGCAACAAGGGGCTGAGAAAGCCA CTAGACGTTACTCACTGCCATCTTCAGGTAATAACGCAAGAGTCACTTCTGATTCTCCTAAGACAACAAGAGTCTCAAACTCTGGT GGCAAAACCGGGAAGAAGACCGAGAAACCTTCGGCCCGAGAAGGCAATGGGAAGACAGCTCAGGTAGAGTGGAAGAGATGATATTC ATCTGGTATTCAAAGAGGTCTCTAATGTTTCCCACTCTACAGATATGTTACCATCTATCTATATAGTTAGAGTATGTAATTTCTGT TTGTGTTTGTGTTGAGAATGTACATCATCGGTTTGTTTTTTGTGTGTGAGTGGCAAGTTTATTTTCTGTTTTCATGCTACATTCCT TCTGTTATTACCTTGAAAAATCAACTTTGGTTA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAF81526 calmodulin binding protein IQ [Brassica rapa]	1016	9e-108
BAJ33816 unnamed protein product [Thellungiella halophila]	945	2e-099
XP_002893020 hypothetical protein ARALYDRAFT_335142 [Arabidopsis lyrata subsp. lyrata]	860	1e-089
NP_173318 protein IQ-domain 30 [Arabidopsis thaliana]	857	3e-089
AAW22636 calmodulin binding protein IQD30 [Arabidopsis thaliana]	857	3e-089

Swiss-Prot top hits (Blast detail)	Score	e value
Q8L4D8 Protein IQ-DOMAIN 31	701	1e-072

TrEMBL top hits (Blast detail)	Score	e value
A8CF59 Calmodulin binding protein IQ	1016	6e-108
Q2NND8 Calmodulin binding protein IQD30	857	2e-089
Q501D2 At1g18840	857	2e-089
B9DH53 AT1G18840 protein	850	1e-088
Q9M9V3 F6A14.7 protein	805	2e-083

Arabidopsis top hits (Blast detail)	Score	e value
AT1G18840.1 IQD30; calmodulin binding	857	9e-092
AT1G18840.2 IQD30; calmodulin binding	857	9e-092
AT1G74690.1 IQD31 (IQ-domain 31); calmodulin binding	701	1e-073
AT1G14380.1 IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding	143	6e-009
AT1G14380.2 IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding	143	6e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			25%


8	1			25%


12	1			25%


11	1			25%

Unigene Members	Member information