Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN11640

FASTA Sequence
Unigene ID: UN11640Length: 990 SSR 
GGAACCTCAGGCGAGTGATCATGTTCTTGGTTCTATATCTAACCGTCGGTACTCTCTGTTTCTACCTCGTGAGAAACCAGATCTCC
GGTCACAAGACCAACGGTGTGTTGGATGCTGTCTACTTCTGCGTTGTAACAATGACAACCGTTGGATACGGCGACCTTGTCCCTAG
TAGCTCTGCATCTATACTACTCGCTTGTGCCTTTGTCTTCTCAGGAATGGTCCTAGTGGGTCACCTCTTAAGCCGAGCAGCGGATT
ATCTAGTGGAGAAGCAAGAGACTTTGCTTGTCAGGGCTTTCCATTTGCGTCAAAGCTCCGGTCCACTAGACGTTCTCAAGTAGTTG
CAAACTAACAAGCTGAGATACAAATGCTACGTTACGTTCATTGTCTTTGTAGTCCTCGTCCTTGCTGGTACTGTTTTCCTTGTAAC
GTTTGAGAATATGCCGGTTATTGAAGCCTTCTACTGTGTTTGCTCCACGGTTACTACATTTGGTTATGGAGACAAAAGCTTTAACT
CTGGAACCGGACGCCTTTTCGCTGTGTTTTGGATCTTGACGAGTACTATATGTTTGGCTCAGTTTTTACTCTATGTAGCTGAGTTA
AATGCGGAAACTAAGCAGAGGGAGTTGGTGAAAGGTTTTGACAAGGAGGATCACAAACAATGATCTTGAAGCTGCTGATCTTGATG
AAGATAGAGTTGTCGAAGCTGCAGAGTTTATTGTATATAAGCTGAAAGAAATGGGGAAGATAGATGAGAAAGATATATCTGGGATC
ATGGAAGAGTTTGAGCAACTTGATTACGATGAATCTGGAAACCTGACCAATTCTGACATCGTTCTAGCTCAGATCCAAAGGTAAGC
AGCATTCATTTAAGTTATTATACCTGCACACAACTATAAGAAGTAAAGAGAGTGAACAGTTCTTTTTTTGGAGATGTTGTTTGTTT
CTGTATGTGTGTTTGTACTGTAATGCCATAGACTCTCTCTCTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAA65988 outward rectifying potassium channel KCO1 [Arabidopsis thaliana]9152e-096
XP_002864404 outward rectifying potassium channel KCO1 [Arabidopsis lyrata subsp. lyrata]9152e-096
NP_200374 calcium-activated outward-rectifying potassium channel 1 [Arabidopsis thaliana]9116e-096
AAM64705 outward rectifying potassium channel KCO [Arabidopsis thaliana]9044e-095
AAF97863 outward-rectifying potassium channel KCO1 [Eucalyptus camaldulensis]7673e-079

Swiss-Prot top hits (Blast detail)Scoree value
Q8LBL1 Calcium-activated outward-rectifying potassium channel 19112e-097
Q9FWX6 Putative outward-rectifying potassium channel 43485e-032
Q9SVV6 Probable calcium-activated outward-rectifying potassium channel 63314e-030
Q9FL25 Probable calcium-activated outward-rectifying potassium channel 23153e-028
Q9S6Z8 Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic2015e-015

TrEMBL top hits (Blast detail)Scoree value
Q0WNY4 Outward rectifying potassium channel KCO9114e-096
Q9LLM5 Outward-rectifying potassium channel KCO17672e-079
A7BK76 Potassium channel7521e-077
Q9AR58 K+ channel protein7492e-077
Q9ZP53 K+ channel protein7492e-077

Arabidopsis top hits (Blast detail)Scoree value
AT5G55630.1 ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel9112e-098
AT5G55630.2 ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel9112e-098
AT1G02510.1 TPK4; outward rectifier potassium channel3484e-033
AT4G18160.1 KCO6; outward rectifier potassium channel3314e-031
AT5G46370.1 KCO2 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2); calcium ion binding / outward rectifier potassium channel3153e-029

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
93  100%

Unigene MembersMember information