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Information for unigene UN11644
| FASTA Sequence |
| Unigene ID: UN11644 | Length: 1489 |
SSR | | GGACAGCCATTTCCACTCTCAACACTCTGTAAACTATAACACAGAGAGAGAGAGAGAGAGAGCTTCGATCTTTAGTAAGGGAAGAG
CTAAAGCTTACAGATCGTAAAATCGGAGAAGATGCAGCCGTACGGTATCCAATCGATGCTCAAGGAAGGCTACAGACACCTCTCGG
GTCTCGACGAAGCCGTCATCAAAAACATCGAGGCTTGTAAGGAGCTCTCCACCATCACCCGCACTTCTCTCGGCCCCAACGGGATG
AACAAGATGGTTATAAACCATTTAGATAAGCTCTTTGTGACCAACGACGCTGCGACGATTGTGAACGAGCTCGAGATTCAGCACCC
TGCCGCGAAGATTCTGGTTCTAGCTGCCAAGGCTCAGCAAGAAGAGATCGGGGACGGAGCTAATCTGACGATCTCCTTTGCTGGGG
AGCTTTTGCAGAACGCTGAGGAGCTTATTAGGATGGGGTTGCATCCGAGTGAGATTATCAGTGGATATAACAAAGCTATCGTTAAG
GTTGTTGAGATTCTTGAGCAGTTGGTTGAGAGTGGTTCTGAGACGATGGATGTGCGTAGCAAAGATGAAGTTGTTTCGAGGATGAG
AGCTGCTGTCGCTAGCAAGCAGTTTGGTCAAGAGGAGATTTTATGTTCCTTAGTTGCTGATGCTTGTATTCAAGTCTGCCCAAAGA
ATCCAACGAACTTCAATGTGGATAACGTCCGTGTTGCCAAGCTTCTTGGAGGAGGATTGCACAACTCTTGCATTGTCCGTGGCATG
GTCTTGAAAAGTGATGCTGTTGGGAGCATAAAGAGAATGGAGAAGGCAAAGGTTGCTGTGTTTGCTGGGGGCGTGGATACTACTGC
AACAGAGACTAAAGGAACTGTCTTGATCCATAGCGCTGAGCAGCTAGAGAATTATGCAAAGACAGAGGAAGCTAAAGTCGAGGAGC
TGATTAAAGCTGTTGCTGAATCAGGAGCTAAAGTAATTGTTAGTGGAGGATCAGTTGGAGAAATGGCATTGCATTTCTGTGAGCGC
TACAAGATAATGGTCTTGAAAATTAGCTCAAAGTTTGAACTCAGGCGTTTCTGCCGTACAGCTGGGGCTGTCGCTCATTTGAAACT
GAGCCGACCAAGCCCTGATGATCTGGGTTACGTTGATTCCATATCAGTCGAGGAGATTGGTGGTGTGACAGTCACTATTGCAAGAA
ACGAGCAAGGTGGTAACTCAATCTCTACAGTTGTTTTGCGTGGAAGCACGGATAGCATCTTGGACGACCTTGAAAGAGCTGTTGAT
GATGGAGTTAATACATACAAGCTATGTGCAGAGACAGCCGTATCGTTCCTGGGGCTGCAGCTACTGAAATTGACTGGCTCAGAGAT
TGAGATATGCCAATGCAGAACAGGTAGACAATACGCATCACAATACGCATAGAGCTTCGAGTTGTACCAAACCTTGCGACACGCTG
CCTCATGCGATGGAATCATGCCTCTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002882322 hypothetical protein ARALYDRAFT_477651 [Arabidopsis lyrata subsp. lyrata] | 1951 | 3e-216 |
| NP_566219 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] | 1938 | 8e-215 |
| AAF05855 putative T-complex protein 1, theta subunit (TCP-1-Theta) [Arabidopsis thaliana] | 1938 | 8e-215 |
| XP_002871808 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1877 | 1e-207 |
| XP_002282088 PREDICTED: hypothetical protein [Vitis vinifera] | 1802 | 5e-199 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q552J0 T-complex protein 1 subunit theta | 1125 | 7e-122 |
| Q3ZCI9 T-complex protein 1 subunit theta | 1070 | 2e-115 |
| Q4R5J0 T-complex protein 1 subunit theta | 1069 | 2e-115 |
| P42932 T-complex protein 1 subunit theta | 1065 | 6e-115 |
| P50990 T-complex protein 1 subunit theta | 1061 | 2e-114 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94K05 At3g03960 | 1938 | 6e-215 |
| Q9SQR6 Putative T-complex protein 1, theta subunit (TCP-1-Theta) | 1938 | 6e-215 |
| B9SHG6 Chaperonin containing t-complex protein 1, theta subunit, tcpq, putative | 1779 | 2e-196 |
| A9PG05 Putative uncharacterized protein | 1775 | 4e-196 |
| B9I5Y4 Predicted protein | 1775 | 4e-196 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G03960.1 chaperonin, putative | 1938 | 3e-217 |
| AT3G18190.1 chaperonin, putative | 439 | 2e-043 |
| AT3G11830.1 chaperonin, putative | 390 | 1e-037 |
| AT3G20050.1 ATTCP-1; ATP binding / protein binding / unfolded protein binding | 377 | 3e-036 |
| AT1G24510.1 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative | 355 | 1e-033 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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