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Information for unigene UN11739
| FASTA Sequence |
| Unigene ID: UN11739 | Length: 1159 |
SSR | | ACAGATTCATATATTTTCTGATATACACCGCTTCTCTAAACTCTCTCTCTCTCAAAGACCGAACCTTCGATCTCATTATCTGGAGG
AGCAGCTGCCATTGCTATGTTGATAGGACCAGATGCTCCTATCGTTTTCGAGAGCAAATTGAGAGGAAGCCACATGGCTCATGTCT
ATGACTTCTACAAGCCAAATCTTGCTAGCGAGTACCCGGTTGTTGATGGTAAGCTTTCACAGACATGCTACCTTATAGCACTTGAC
TCTTGCTACAAACATTTATGCAACAAGTTTGAGAAACTTGAGGGCAAAGAGTTCTCAATCAATGATGCTGATTACTTTGTCTTCCA
TTCTCCATACAACAAACTTGTGCAGAAAAGCTTTGCTCGTCTCTTGTACAACGACTTCTTGAGAAACGCAAGCTACCTTGACGTTG
CTGCCAAAGAAAAATTCACTCCTTATTCCTCTTTGTCCCTCGATGAGAGTTACCAAAGCCGTGATCTTGAAAAGGTGTCACAACAA
CTAGCGAAAACGTATTATGATGCTAAAGTGCAACCAACGACTTTAGTACCAAAAGAAGTGGGTAACATTACACTGCTTCACTCTAC
GCAGCATTTGCTTCCCTCATCCACAACAAACACAGCGATTTGGTGGGAAAAGGGGTGGTTATGTTTTCATATGGAAGTGGTTCAAC
CGCAACGATGTTCTCATTGCGTCTTTGCGAGAACCACTCTCCTTTCAGCTTATCAAACATCGCTTCTGTAATGGACGTTGGTGGTA
AATTGAAGGCTAGACATGAGTATGCACCTGAGAAGTTTGTGGAGACAATGAAGCTAATGGAGCATAGGTACGGAGCAAAGGAGTTC
GTGACCAGCAAGGAAGGTATCTTAGAGCTTTTGGCTCCGGGGACTTACTATTTGAAAGAGGTTGATTCATTGTACCGGAGATTTTA
TGGCAAGAAAGGGGACGATGGATCCATAGCCAATGGACACTAAATCACTTTAAAGATGGCCTTCGCTCATCCACTCTTTATCTTCT
TCTTTTTTCACTATTGATTTGCTTTCTCAAGCTTATTTAGTATGTTGTGTTTTCTTTTAAAAACTAAGTCCGTTAAATTGATGAAT
TATTAAAATTTAATAAGAAGTTAGAATAAACCTTTAAATCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAF69804 HMG-CoA synthase [Brassica juncea] | 850 | 8e-089 |
| 2FA3 Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 | 850 | 8e-089 |
| 2F82 Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form | 850 | 8e-089 |
| AAG32922 HMG-CoA synthase [Brassica juncea] | 839 | 2e-087 |
| AAG32924 HMG-CoA synthase [Brassica juncea] | 837 | 3e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P54873 Hydroxymethylglutaryl-CoA synthase | 823 | 5e-087 |
| P54872 Hydroxymethylglutaryl-CoA synthase A | 461 | 5e-045 |
| P54961 Hydroxymethylglutaryl-CoA synthase 1 | 419 | 3e-040 |
| Q86HL5 Hydroxymethylglutaryl-CoA synthase B | 415 | 1e-039 |
| Q01581 Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 409 | 5e-039 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M6U3 HMG-CoA synthase | 850 | 6e-089 |
| Q9FVG2 HMG-CoA synthase | 839 | 1e-087 |
| Q9FVG0 HMG-CoA synthase | 837 | 2e-087 |
| Q9FVG1 HMG-CoA synthase | 831 | 9e-087 |
| A9ZMZ7 Hydroxymethylglutaryl-CoA synthase | 746 | 7e-077 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G11820.1 MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase | 823 | 4e-088 |
| AT4G11820.2 MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase | 823 | 4e-088 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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