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Information for unigene UN11748
| FASTA Sequence |
| Unigene ID: UN11748 | Length: 1224 |
SSR | | GAGGCTAATTCGAAAAACTTCACTTAGTGTTGGGTCAGATATCACACACCACAGAAGCAGATCACAAGACAAAAGGTATTTTAAAG
TTTACAGAACTGGAACTCTGGTTTGTTGTTGTAGTCTCAGACAACTCCTTCATACTTGTCCATGCTTTTCTCTTCCTCTTATTCGA
TCCTCCACCACCACCACCACCACCAACTGTTGCTTTTTTCTCAGGAACACTTTCGGGATCAACTGGTTTCTTACTTTTAGATCTCC
TTATTCTCTTCTCTCTCTCCAGTGTAAGCATTGGCTTTGGTGTATTCTCCACAACACTAACATTCTCAACTCTTCTTTCAGGTGAA
GAAGGAAGTTGGATTTCTTGAGGCGCTACCACCATCGTCACATCTTTATCAATCTTGGGACGTGGACGAGTTGTTTTCGGCTTGGG
CGGGTACATGTCTTTCATCTGACCTTTTGTAGTACCTCTCTTGAGATTACGGTGAGAACACAAGTTGCAGTAGTAAACTACATTGT
TCTGAGGCGGAAACATGTTAGGCTTCTTCTTGTACCTTCTCCTCATGTGTTTCTTCTTGTTAGCCGAAACCTTGTCGATTCTAACA
TTACAATTGAAGCCAGGCTGAAGAACAGTCTCACACCTTTGACAAGAGAAGAGGTCAGGATCGTGAGGAATGTCGGAAGCTTGTCC
ATCGGCTGCGAGACGCCGACCGAAGAAAGTAGCTAAGGACGGGATGGGAGAATCTCCGCCGGTAGACCAGAGAGCGAGATTCTTCA
AGTGCTCGTGTCTGAGCACAGACTTGAGATTAGGTCCTCCTTGAGCTTTTGTAAGCTTGTTAGCTCCTCCCCGTTTCCCCATCTCT
CCGCGTTCTTGCTCAGTTCTCTTCGTTAGGATTACTAAAGAGACGAAACAGATGAGGTAATATTATGGCGGCTTGAACTCCAGCTT
CAAATCCAGAAGCGAAAATCCCTAGAGCTTTCGAAACACAAATACAGAACGAAAGTGGTAATGACGGTCCTGTTCTTTTCCCGGTC
GCAGCGACCCGCGACCAGCGACCTTTCTCGAGATTGAATCCGGAAGAGGAAGTTCAAAATCTCAAAATCAAAGCGAGAGAGAGAGA
GTTGTTGCTTTTTCTCTCTTGGGAGAAACCTTCTTTTTCGTCCCCTCTCTGCTTTTGCGCTGCTGTGTTGTTTATCGTGCGCTCTA
TCAAACTGACTTTCCTACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198943 uncharacterized protein [Arabidopsis thaliana] | 787 | 2e-081 |
| XP_002870646 hypothetical protein ARALYDRAFT_916082 [Arabidopsis lyrata subsp. lyrata] | 760 | 2e-078 |
| BAB11103 unnamed protein product [Arabidopsis thaliana] | 658 | 2e-066 |
| XP_002509798 conserved hypothetical protein [Ricinus communis] | 465 | 4e-044 |
| XP_002529729 conserved hypothetical protein [Ricinus communis] | 399 | 2e-036 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84VV1 At5g41270 | 787 | 1e-081 |
| Q9FHD6 Genomic DNA, chromosome 5, TAC clone:K1O13 | 658 | 1e-066 |
| B9RCB4 Putative uncharacterized protein | 465 | 3e-044 |
| B9SUR0 Putative uncharacterized protein | 399 | 1e-036 |
| B9GWI5 Predicted protein | 338 | 1e-029 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G41270.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 45 Blast hits to 45 proteins in 15 species: Archae - 0; Bacteria - 21; Metazoa - 8; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 815 | 4e-087 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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