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Information for unigene UN11770

FASTA Sequence
Unigene ID: UN11770Length: 947 SSR 
GGCTCTCTCTCTCTCTCTCTCTCTCTCTCCACCAATTTCCCGGCTTCCGCGATTTTGATTTGTAGCGCCGGACCGGAGAAGATAAA
ACCCTAACTCCGCCACCTCAGAGGGACTTCCACTTCATCCTAAATCCTCGCGCGTCGTCGTATTCATCCCTTCTCTCTCTCTCTCT
ATGATGAACTGTGCAATTTCTGGAGAAGTCCCCGAGGTGCCTGTGGTTTCGACCAAGTCAGGTTTGCTCTTCGAGAGGCGATTAAT
CGAGAGCCATATATCGGATTATGGGAAGTGCCCGGTTACTGGGGAGCCTCTTACCATTGATGACATTGTTCCCATCAAATCTGGGA
AGGTCATAAAACCGAAATTATTGCATACAGCTAGTATCCCTGGATTGCTTGGAACGTTCCAGAATGAATGGGATGGTTTGATGCTA
TCAAATTTTGCACTGGAGCAACAACTGCATACGGCAAGGCAAGAGCTAAGTCATGCATTGTACCAGCATGATTCTGCTTGTCGCGT
GATTGCTAGACTTAAAAAAGAAAGAGATGAAGCACGCCAATTGCTTGCAGAGGTTGATCGACATATACCTGCTTCCACAGAGGCTG
TGACAGCTAATGCTCCTCTGAGTAATGGTAAACGAGCTGCGGGTGATGAGGAGACAGGTCCTGATGCGAAGAAGTTGTGTCCTGGC
ATTTCTGCTGACATCATCACGGAATTGACAGATTGCAATGCTGCTCTCTCCCAGAAGCGCAAAAAGCGACAGATTCCTGAAACATT
GGCTTCGATAGATGCTTTGGGGAGGTTCACTCAGCTATCAAGCCACCCACTTCACAAGACCAACAAACCTGGCATTTGTTCTATGG
ACATCTTACATTCTAAGGATGTCATTGCTACTGGAGGAGTTGATGCAACTGCTGTTATCTTTGATCGCCCTTCAGGGCAAATCTTG
T

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002881277 transducin family protein [Arabidopsis lyrata subsp. lyrata]12404e-134
NP_001031471 Pre-mRNA-processing factor 19-2 [Arabidopsis thaliana]12297e-133
AAB80652 putative PRP19-like spliceosomal protein [Arabidopsis thaliana]12297e-133
NP_850206 Pre-mRNA-processing factor 19-2 [Arabidopsis thaliana]12297e-133
XP_002889510 transducin family protein [Arabidopsis lyrata subsp. lyrata]11132e-119

Swiss-Prot top hits (Blast detail)Scoree value
O22785 Pre-mRNA-processing factor 19 homolog 212293e-134
Q94BR4 Pre-mRNA-processing factor 19 homolog 111074e-120
Q08E38 Pre-mRNA-processing factor 194651e-045
Q9UMS4 Pre-mRNA-processing factor 194651e-045
Q99KP6 Pre-mRNA-processing factor 194623e-045

TrEMBL top hits (Blast detail)Scoree value
Q2V435 Putative uncharacterized protein At2g33340.312295e-133
Q2V4Q9 Putative uncharacterized protein At1g04510.211077e-119
B9SQU0 Pre-mRNA-splicing factor, putative10549e-113
B9HKU6 Predicted protein10262e-109
B9HST8 Predicted protein10216e-109

Arabidopsis top hits (Blast detail)Scoree value
AT2G33340.1 nucleotide binding / ubiquitin-protein ligase12293e-135
AT2G33340.2 nucleotide binding / ubiquitin-protein ligase12293e-135
AT2G33340.3 nucleotide binding / ubiquitin-protein ligase12293e-135
AT1G04510.1 transducin family protein / WD-40 repeat family protein11074e-121
AT1G04510.2 transducin family protein / WD-40 repeat family protein11074e-121

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  25%
 
81  25%
 
91  25%
 
181  25%

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