 |
Information for unigene UN11801
| FASTA Sequence |
| Unigene ID: UN11801 | Length: 980 |
SSR | | GGGATTCGATCAATAAAGCAATAGAGACAGAGAAGGAAGAAGAACAAAGCATCTCTCTTTTTGTTTTCTCCGAAGTCACTGAGAGA
GAGAGAGAGAAGAAGAAAAGTTTGAGTTCCGATGAGTTCTGGAGGAGGAGGAATCGTGGCGGGACCAACAGCAGCTCCTGCAAGCG
GCGGTGGAAACGTGGAGTGGCACGTCAGACCACCCAACCCTAAAAACCCAGTCGTCTTCTTCGACGTCTCTATTGGTGGTATCCCC
GCTGGTCGTATCAAGATGGAGCTTTTCGCCGACATTGCCCCCAAAACTGCTGAAAACTTCAGGCAGTTCTGTACTGGTGAACTCAG
AAAGGCTGGGAAGCCACTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCAAGGATTTTATGATTCAAAGTGGTGATTTTCTTA
AGAATGATGGGAGTGGATGCATGTCAATCTATGGCCACCAGTTCCATGATGAGAATTTTACTGCCAAACATACTGGTCCTGGATTG
CTCTCCATGGCAAATAGTGGGCCAGACACTAATGGTTGCCAGTTCTTCATCAGCTGTGCAAAATGCGAGTGGCTTGACAACAAGCA
TGTTGTCTTTGGGAGAGTGCTGGGAGATGGGTTATTGGTGGTGCGGAAGATTGAGAACGTGGCTGTTGGACCAAACAACCGTCCTA
AGCTTGCTGTTGTTATTACAGAGTGTGGGGAGATGTGAGAAATGCTTTTAGCCATGAGATGACTTGAAGAACATTGTCTTCTGAAG
GAGGAATGTAGTGTGAGGCCAAAGCTTTAATTTATAGTTGTAAACGTTACGCATATGTGACTTAAGCTTAAACATTTTGTCATTTA
GTTTTCTTTTTCTTTCACTTTGGTTGCTGGTCAACATTTCCGAAAGCAAAAGCCGCTTGTAAACTTTGGTTTTGGAGATCATTCAT
TGTGAGTGAAAATGAGCTATTTTATATTCATAGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181407 peptidyl-prolyl isomerase H (cyclophilin H) [Arabidopsis thaliana] | 1016 | 4e-108 |
| XP_002881613 hypothetical protein ARALYDRAFT_482885 [Arabidopsis lyrata subsp. lyrata] | 1005 | 7e-107 |
| XP_002513025 peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis] | 903 | 5e-095 |
| XP_002304808 predicted protein [Populus trichocarpa] | 896 | 3e-094 |
| ACJ83867 unknown [Medicago truncatula] | 883 | 1e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q0P5D0 Peptidyl-prolyl cis-trans isomerase H | 675 | 6e-070 |
| O43447 Peptidyl-prolyl cis-trans isomerase H | 675 | 6e-070 |
| P0C1I3 Peptidyl-prolyl cis-trans isomerase H | 659 | 4e-068 |
| P52018 Peptidyl-prolyl cis-trans isomerase 11 | 651 | 3e-067 |
| Q5KA96 Peptidyl-prolyl cis-trans isomerase H | 630 | 9e-065 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZVJ4 At2g38730 | 1016 | 3e-108 |
| B9RG73 Peptidyl-prolyl cis-trans isomerase | 903 | 3e-095 |
| B9GX77 Peptidyl-prolyl cis-trans isomerase | 896 | 2e-094 |
| B7FGI8 Peptidyl-prolyl cis-trans isomerase | 883 | 7e-093 |
| C6SVG5 Peptidyl-prolyl cis-trans isomerase | 883 | 7e-093 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G38730.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative | 1017 | 1e-110 |
| AT3G56070.1 ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase | 503 | 4e-051 |
| AT3G56070.2 ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase | 503 | 4e-051 |
| AT2G21130.1 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase | 502 | 6e-051 |
| AT3G62030.1 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) | 492 | 8e-050 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
