Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN11911

FASTA Sequence
Unigene ID: UN11911Length: 1041 SSR 
GGAAACTGCATCGGTCTGATTCGAACCCCAAACGAATCAGACAATAGCAAGAGACACTCCTTCGAATATACCAAACTTCATTCTTT
GATCTTTTTTTTAAAAAGGATGCTAATATCGCGTTTCCTAGGGTTTCTTGATTTTCATTGATCTTGTTTCAAGAACATGGGAAGCT
TTCGTCGCCGGACTTTTTCATACGATAAACTTCCCGCCGAACCCATTAGGCTCTCGTTCTCAAACTAGATGGCACGACCTCGGTAA
ATGCATCATCATCATCATAGTATCTTTAATCTGTGGTCACTACTTATCAATAGGCGTTGGCTAGCTTCGATTTTAATCTATATTTA
CTACGTGAAGATGTTAATGTAACGAGCTCGGCAACCGTTAGGGATCTCAAGCTTGCCATAGAGACTGCCTTCAGCCACGTCCCAAA
GAAGGGACCCTCCAAAATCTCATGGTCACACGTGTGGGGACATTTCTGCTTATGTTATGGGGGTCAGAAGTTAGTCACCGATACAG
AGTGCATCGGAAGTTATGGCATGAAGGACGGTGATGAGGTAAGATTTAAGAACCATGTGTCTGGCGGCAATGCCGTATTGAACAAG
GGATACTCTAGGAAATCCAAACAAAAGAATTTAGAACGGTTAGGGCCAAAAAAATGAAGATGGGGAAGTGAATAGAGTGGAGGAGA
TTGATCACAGCTCTTGGGATGATATTGAGAAAGGAAGCTTGGTGAGGTATGAGGATGATGTCTTGGAAGTTTCACCAGGAGAAAAC
AGGACTTGTCTAACCACTGTCCACGGTTGCTGCTTTGCTTTTGGTCTGAAGGAGCTTCTTGGGTTTGGCAATGACAAAAGCTATTA
CTCTTTGAGAGATACATGGAGAGACGACTGATTGATTTTTGTTTTCTATCGGTAAAGAGTTTTGGTCGCAGGACACATTTATTTAA
CTTTGTAATCACAACAAAATGATCAAAGTATCATGTTATATTACAAAGGATAGTAATGTTCAGGGAAGCTTTATACAATGATCAGT
AAGTACTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197916 ubiquitin-like domain-containing protein-like protein [Arabidopsis thaliana]4653e-044
XP_002872158 predicted protein [Arabidopsis lyrata subsp. lyrata]4653e-044
AAM63670 unknown [Arabidopsis thaliana]4555e-043
XP_002308669 predicted protein [Populus trichocarpa]2736e-022
CBI21054 unnamed protein product [Vitis vinifera]2692e-021

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8GXI1 Putative uncharacterized protein At5g253404652e-044
Q8LCG3 Putative uncharacterized protein4553e-043
B9HAF3 Predicted protein2734e-022
B9RP32 Putative uncharacterized protein2644e-021
B9RV86 Putative uncharacterized protein2449e-019

Arabidopsis top hits (Blast detail)Scoree value
AT5G25340.1 unknown protein4651e-046
AT4G32270.1 unknown protein2373e-020
AT4G32270.2 unknown protein2347e-020
AT1G80060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32270.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).2177e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  67%
 
111  33%

Unigene MembersMember information