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Information for unigene UN11938
| FASTA Sequence |
| Unigene ID: UN11938 | Length: 1538 |
SSR | | GCGAGACGCTGTACTAATCTTAGATCTATCTCTTTAAGGAGCTGCCCTCGCATTGGAGATCGAGGAGTTGCTTTCCTCTTGGCTCA
AGCTGGTTCTTACTTGACTAAAGTGAAGCTCCAGATGCAGAACGTTACGGGTTTGTCTCTTGCTGTTCTTGGACACTACGGAGCAG
GGGTTACTGATCTTGTGCTATGGGCTTCAAGGAGTGAATGAGAAAGGCTTCTGGGTCATGGGGAATGCAAAAGGGATGAAGAAGCT
GAAGTCTGTTTCAGTAACGTCGTGTAGAGGGATGACTGATGTTGGGCTTGAAGCTGTTGGAAGTGGTTGTACCGATCTGAAGCATG
TCTCTCTGAGCAAATGCTTGCTTGTTTCCGGCAAAGGGCTTGTCTCTTTGGCGAAATCTGCGTTGTTGTTAGAGAGTTTGAAGCTT
GAGGAGTGCCACAGGATCAGCCACTTCGGTTCTTTAGGTTTCCTCGTGAACTGCGGCTCGAAGTTGAAGGCTTTCTCTTTGGTTAA
CTGTCTTGGCATCCAGGACTTCAACTTGGAATCACATCTGAGTTCAACCAGCTGCAGCTCTATACGGTCTTTAACAGTCCGTTGCT
GTCCTGGTTTTGGAGATGCGAGTCTCTCTTTCTTAGGGAAGGTCTGCCATCAGCTTCAGGACGTTGAGCTTTGTGGATTGAATGGA
GTGACTGACGCTGTTGTCCACTCTTTGCTTCAGAGCTGCAACAGTGTTGGTCTAGTGAAGGTGAACTTAAGCGGATGTGTCAATGT
CACAGACAACACAGTCTCGGCGTTATCCTTCCGCCACGGAAGCACATTGGAGTCTCTCAACCTCGATGGGTGCAAGAACATCACTG
ATGCAAGCCTTGTCACAGTAGCCAAGAACTGCTACTCGGTGAATGACCTAGACGTGTCGAACACTTTGGTATCTGATCATGGGATC
CAGGCTTTGGCATCTTCTCCCAACCACTTGAATCTTCAGGTTCTTTCTGTCGGTGGCTGTTCAGGGATCACGGATAAAAGCAAGGC
GTGTATACAGAAACTCGGCCGCACGCTTTTGGGGTTGAACATCCAAAGGTGTGGTAAGATCAGCAGCAGCACTGTGGATACTCTTC
TGGAACAGTTATGGAGGTGTGATATACTTTACTAGATACCTTTCTGCAAGTAGTTTTCTAGGGTTCTGGTCGCTAAACCCCCATAG
ATTTCACCTAGAACTTAGTTTCTTTTCCCAGGACGCAGCAGCTGTTTTTTTTTTGCAAAGTTTTTGGCAGGTTCTTGAGCCTGTTT
CCACAGCTGTTGTGTTCATGGGAATCTTGTTACTGAGTTCTGGTAATCTAGTTAGGGTTTAAGCTTTGGAGTTGTTGTTGTTGTTG
TTGTATATCTATGTTCTTTGTGGGAGTCATTGTTCACTGGTTTAGGTGTGTGATAGTGCCTTTATCTTTCCCTATGTAGAGCTTTT
GGCAATGGCGGTGTATCTTCTTAGTCGCCATTACATCTCTTAGGAGTTGTTTTTTCTTTTGTGTTCTGCCAAAGCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874252 ein3-binding F box protein 2 [Arabidopsis lyrata subsp. lyrata] | 1440 | 5e-157 |
| NP_197917 EIN3-binding F-box protein 2 [Arabidopsis thaliana] | 1434 | 2e-156 |
| BAJ34438 unnamed protein product [Thellungiella halophila] | 1409 | 2e-153 |
| XP_002308665 ein3-binding f-box protein 3 [Populus trichocarpa] | 979 | 1e-103 |
| XP_002324298 predicted protein [Populus trichocarpa] | 955 | 8e-101 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q708Y0 EIN3-binding F-box protein 2 | 1434 | 1e-157 |
| Q9SKK0 EIN3-binding F-box protein 1 | 949 | 2e-101 |
| Q9C5D2 F-box/LRR-repeat protein 4 | 269 | 1e-022 |
| Q32L08 Protein AMN1 homolog | 189 | 2e-013 |
| Q58DG6 F-box/LRR-repeat protein 20 | 188 | 3e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HA53 Ein3-binding f-box protein 3 | 987 | 1e-104 |
| B9IKX3 Predicted protein (Fragment) | 955 | 6e-101 |
| B9RP47 Grr1, plant, putative | 953 | 1e-100 |
| B9IMY8 F-box family protein | 948 | 4e-100 |
| B9HAJ6 Ein3-binding f-box protein 4 | 931 | 3e-098 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G25350.1 EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding | 1435 | 7e-159 |
| AT2G25490.1 EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase | 949 | 2e-102 |
| AT4G15475.1 F-box family protein (FBL4) | 269 | 1e-023 |
| AT5G27920.1 F-box family protein | 200 | 1e-015 |
| AT3G58530.1 F-box family protein-related | 192 | 9e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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