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Information for unigene UN11939

FASTA Sequence
Unigene ID: UN11939Length: 1253 SSR 
GGTAGAGAAGGAGGAAGAAGGCAATGGCGGGTAGGTTTTGGTGTCATATGTGTTCACAAGCTGTGGATCCTATCATTGACGCAGCG
GAGATCAAATGTCCCTATTGCCAAAGCGGGTTCGTTGAGGAAATGAGCGGTGAGAGTAATGGCAATGGCGGCAGCAGCAGGGAGGT
TCAAGACCAAGAGATCGATTTCGGTACGGACCGTGCCTTGTCTCTATGGGGTCCGATCTTGGTTGGAATGATGAGTAATCCTAGGA
GACGTAGAAGGTTTCGGAGGACAGAGTTTGGTCTTGATAATGATGACGACATCAGCAGCAGCACTGTCGACAATCCTCATCACAAT
CGTCGTCATCATCATCATCATCGCCACAGGGAACATGGTGGAGAGATTGATTTGGGCAGGGAGGTTGATTCCATCATCAGGAGGAG
ACGGAGAAGCTCAGCTGCGATACTGCAGTTGCTTCAAGGCATACGTGAAGGGATTAACTCGGATCACGAGAGCTCGGACGGGAACA
CTACTTCTCGCTCTGCGATTGGAGATTACTTAGCTCGACCGGAGTTTGACAGCTTGCTTCGAAATCTAGCTGACAACGATCTGATA
AGGCGACAAGGGACACTTCCAGCGCGAAAGGAAGCGGTGGAGAATCTCCCAACGGTTAAAGTATGCGAGCCGTTGCAATGTTCGGT
TTGTTTGGAGGACTTTGAGAAAGGAAGCGAAGCTAAAGAGATGCCGTGTAAGCACAAGTTTCATAACCGGTGTATAGTACCGTGGC
TTGAGCTTCACAGTTCGTGTCCTGTGTGCCGATATGAACTACCTCCTGATGATGAGGTGAAGGCTGATCTGGTGAGACCGACGACA
AGAAGTGTAGGGGTCAACTTGCGTAATGAGAATGTGGAAGAGAATGCAAGGAATATTAGTGGGAGCGAGAGAAGGTTCTCGTTACC
GTGGCCGTTGAGTGGATTGTTCTCTTCCTCCTCTTCGTCGTCATCAGGATCAACATCAGGGTCGTCTCAGGTTAATGAGAACTCAA
GTTAAGGATTTCAAAAAAGAAGAGAAACAAAACAATCTCTGCCCCGTTTCTATATTTGTCAGGTTGAAGTACATAAGATCACTTTT
GAGGAATGGAGTAGTTTCCTTGTTTGTTTTATATATTATCTCTTGCTAGGAACAAATGTTATTCTCAAGTGAATTCTTTCAAACTA
TTTGCACTTAGCACAGTTAAAATGATTATCATATGGATATGTTTGGTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867566 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]6626e-067
CAA18230 putative protein [Arabidopsis thaliana]6464e-065
NP_194370 RING/U-box domain-containing protein [Arabidopsis thaliana]6464e-065
XP_002864451 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]5561e-054
ACU20614 unknown [Glycine max]4565e-043

Swiss-Prot top hits (Blast detail)Scoree value
Q3T0W3 E3 ubiquitin-protein ligase RNF1812161e-016
Q9P0P0 E3 ubiquitin-protein ligase RNF1812152e-016
Q9Y4L5 E3 ubiquitin-protein ligase RNF1152124e-016
Q9D0C1 E3 ubiquitin-protein ligase RNF1152081e-015
Q91YL2 RING finger protein 1262071e-015

TrEMBL top hits (Blast detail)Scoree value
O65594 Putative uncharacterized protein AT4g264006463e-065
Q8L5Z3 AT4G26400 protein6463e-065
C6TFL2 Putative uncharacterized protein4563e-043
B9GXX2 Predicted protein (Fragment)4554e-043
B9GLB5 Predicted protein (Fragment)4529e-043

Arabidopsis top hits (Blast detail)Scoree value
AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein6506e-068
AT4G26400.1 zinc finger (C3HC4-type RING finger) family protein6506e-068
AT5G56340.1 zinc finger (C3HC4-type RING finger) family protein5663e-058
AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein3872e-037
AT3G13430.1 zinc finger (C3HC4-type RING finger) family protein3801e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information