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Information for unigene UN11948

FASTA Sequence
Unigene ID: UN11948Length: 1098 SSR 
GGAGAAATATCAGACTGGTGACAGTCTGTTGTTTTCGTTTCACTCGTGGCCTCTCTCCCATCTCTTTCTTCCTTCTACATCTTCCC
CCGCCTCTCTCTCTCTCTCTCTCTAGATCCATCAATGGCGTCCCTCGTCGAATCCGGTTGGCAGTACCTTGTGACACATTTTAGCG
ACTTTCAACTGGCCTGTATCGGGAGTTTTCTCCTCCATGAGAGCGTCTTCTTCTTATCTGGCCTCCCTTTCATTTATCTAGAAAGG
CAAGGCTTTCTCACCAAGTACAAGATTCAGGCAAAAAATAACACGCCTGCAGCTCAAGAAAAATGTATAACTCGCTTGTTGCTTTA
TCATTTCTGCGTTAACTTGCCTCTGATGATGGCCTCCTATCCTGTCTTCAGAGCCATGGGAATGCGAAGCAGTTTTCCTCTACCCT
CCTGGAAAGAAGTGTCTGCCCAGATATTATTCTACTTCATCATTGAGGATTTTGTTTTCTATTGGGGTCATCGGATCTTGCATACA
AAATGGCTGTACAAGACCGTGCACAGTGTTCATCATGAATATGCCACACCATTTGGTTTGACATCGGAATATGCTCACCCCGCTGA
GATTCTGTTCCTGGGATTTGCTACCATAGTCGGGCCAGCTCTCACCGGCCCCCACCTAATTACTCTCTGGTTATGGATGGTGCTGA
GAGTGCTTGAGACAGTTGAGGCACATTGTGGTTATCATTTCCCTTGGAGCCTCTCAAATTTTCTTCCTCTATATGGAGGTTCTGAC
TTCCATGACTACCATCACCGCCTCCTCTACACAAAATCTGGAAATTACTCCTCAACTTTTGTGTACATGGACTGGATCTTTGGTAC
CGATAAGGGCTACAGAAGACTGAAGTCTCTTAAAGAAAACAGTGACTTGAAACAAAATGTCGTTGGAATTGTGGATTTGCGAGTGT
CCGTTTGCATCTCTGTGGAGGTCTTATTCTTCAACCTTGTTTTCTTTTCCATTTTTAGTTTGTTATGTGTCTAGAACTGCTACAAA
TACATTTGGTACCTCAACTCTCGGAGTAGCTAAAATTAACATGCGTTTGGGTTGGGCTTTTGAGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889647 sterol 4-alpha-methyl-oxidase 2 [Arabidopsis lyrata subsp. lyrata]14117e-154
NP_563789 methylsterol monooxygenase [Arabidopsis thaliana]13902e-151
AAM64821 putative C-4 sterol methyl oxidase [Arabidopsis thaliana]13865e-151
AAF79571 F22G5.23 [Arabidopsis thaliana]13472e-146
XP_002881040 hypothetical protein ARALYDRAFT_481856 [Arabidopsis lyrata subsp. lyrata]13193e-143

Swiss-Prot top hits (Blast detail)Scoree value
Q55D54 Putative C-4 methylsterol oxidase DDB_G02697885942e-060
Q55D52 Putative C-4 methylsterol oxidase DDB_G02709465781e-058
Q15800 C-4 methylsterol oxidase5117e-051
Q5R574 C-4 methylsterol oxidase5117e-051
O35532 C-4 methylsterol oxidase5109e-051

TrEMBL top hits (Blast detail)Scoree value
Q8VWZ8 At1g0742013901e-151
Q8LBE1 Putative C-4 sterol methyl oxidase13864e-151
Q9LNW2 F22G5.2313471e-146
B6REN1 Putative C4-methy sterol oxidase13112e-142
B2BXV6 Putative uncharacterized protein13093e-142

Arabidopsis top hits (Blast detail)Scoree value
AT1G07420.1 SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase13907e-154
AT2G29390.2 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase13055e-144
AT2G29390.3 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase12681e-139
AT1G07420.2 SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase11156e-122
AT2G29390.1 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase10781e-117

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  67%
 
101  33%

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