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Information for unigene UN11956

FASTA Sequence
Unigene ID: UN11956Length: 765 SSR 
AGGGACTGTCGTCTTCCTCTCGCTGCTACCGTCTCTCACGATGCCGAGGTATTACTGTGATTATTGTGACACTTATCTCACCCACG
ACTCCCCATCCGTGAGGAAGCAGCACAATTCTGGTTACAAACACAAGGCGAATGTAAGAACATACTATCAGCAATTTGAGGAACAG
CAAACCCAAAGTCTGATTGATCAGAGAATTAAAGAGCATCTTGGCCAAACTGCAGCGTACAATCAGGTTGGTGCTGTGTTTAATCA
GCATATGCTCGCTAGACCTCGCCTTCCTATGATGCCTATGCCTATGCCTATGGGGATGCGGCCTCCTATTTTGCCTAGACCCATTA
TCCCTGGTCAAGGTTACATGCCTCCTCCAGGAGTACCACAGATGATGGCACCACCTGGCGGTCCTCTACCACCACCACCTCCACAA
AATGGTATTCTTAGGCCACCAGGATTGGCTCCAATACCAGGTCAAGGTGGTGCGCCACCTCCCAATTACAGTGGACTTCCTCCTCC
TCCTCCTTATCATACAAATCCAGCTGCTGCTCCACCAAGTGTTGGCTTCAACAATCCGAACCCTGGTGCTGAATCTCCTGAAACCA
ATGAGTAGAGTTTAGGTCTGATGAGTTATTTTTCTCCTGCCAAAAAATTTCAGAGCTCTTGTTTAACACAGTTTCTTTTACCTTTT
CTAATCTAATCCGTGTGAAGAGGTCTAGATGTAATGTACGTTAATTGCATAATTTTATGTACTAGATTCTTATTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874880 hypothetical protein ARALYDRAFT_911890 [Arabidopsis lyrata subsp. lyrata]8943e-094
NP_567250 C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana]8836e-093
AAO44073 At4g03120 [Arabidopsis thaliana]8782e-092
XP_002304170 predicted protein [Populus trichocarpa]6022e-060
EAY85293 hypothetical protein OsI_06664 [Oryza sativa Indica Group]5432e-053

Swiss-Prot top hits (Blast detail)Scoree value
P09234 U1 small nuclear ribonucleoprotein C2831e-024
Q62241 U1 small nuclear ribonucleoprotein C2812e-024
Q32PA0 U1 small nuclear ribonucleoprotein C2793e-024
Q03369 U1 small nuclear ribonucleoprotein C2767e-024
Q54YA5 U1 small nuclear ribonucleoprotein C2453e-020

TrEMBL top hits (Blast detail)Scoree value
Q56XE4 Putative C-type U1 snRNP8834e-093
Q84VV2 At4g031208782e-092
B9GWP7 Predicted protein6022e-060
A2X383 Putative uncharacterized protein5431e-053
C5XZK6 Putative uncharacterized protein Sb04g0098805322e-052

Arabidopsis top hits (Blast detail)Scoree value
AT4G03120.1 proline-rich family protein8842e-095
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1646e-012
AT1G44191.1 Encodes a ECA1 gametogenesis related family protein1512e-010
AT4G20440.1 smB (small nuclear ribonucleoprotein associated protein B)1323e-008
AT4G20440.2 smB (small nuclear ribonucleoprotein associated protein B)1323e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  100%

Unigene MembersMember information