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Information for unigene UN12020
| FASTA Sequence |
| Unigene ID: UN12020 | Length: 1114 |
SSR | | AGTATAAACTGTCACCAGCTAAAATGCACCACCACATCTACGTTGTTGTTGTTGTTTATCATTCATCCCCAAGAATCACTTTCTTT
TGAAAAATTCTCTTCTTCCACCCAAAGTTCATCATCAATGGCGGATCCTCCAAGATCCGAACCGTTTCCTTCTTCCCGGCTCGATT
CCGACGCCGGAGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATCTGACGACGGCGATCGTGGGACCC
ACGATATTGACGTTACCGTACGCGTTCAGGGGGTTGGGATGGTGGTTAGGGTTTGTGTGTTTGACGACGATGGGACTCGTCACTTT
CTACGCTTACTACCTCATGTCTAAGGTTCTCGATCACTGTGAAAAATCTGGCCGCCGTCACATTCGATTCCGGGAACTCGCCGCCG
ACGTTCTCGGATCAGGATGGATGTTTTATGTGGTTATATTCATTCAAACAGCTATCAACACGGGAATCGGTATTGGTGCCATTCTA
CTCGCAGGCCAATGCCTTGAAATAATGTACTCGAGCCTTTTCCCACAAGGAACCTTGAAGCTCTACGAGTTCATTGCTATGGTGAC
AGCCGTGATGATTGTTCTGTCACAGCTCCCAAGTTTTCACTCTCTTAGACACATTAACTGTGTTTCTCTCCTTCTCAGCGTAGGCT
ACACTTTCCTCGTTGTTGCGGCTTGTATCAACCTAGGCTTGTCTAAACACGCTCCTAAACGTGAGTATTCACTAGAGCCTACGGAC
TCGGGAAGAGTTTTTAGTGCCTTCACATCCATTTCGATCATTGCTGCTATTTTCGGAAATGGAATTTTGCCTGAAATACAGGCAAC
TCTTGCCCCACCAGCTACAGGGAAGATGTTGAAAGGACTATTGTTGTGTTACAGTGTGGTCTTCATCACGTTTTACTCGACTGCAG
TTTCGGGTTATTGGGTATTTGGTAATAGTTCGAACTCTAATATTCTCAAGAACCTAATGCCTGACCAAGGACCTACTCTGGCTCCT
ATTGTCGTCATTGGCCTAGCAGTCATCTTTGTTCTTCTTCAGCTCTTCGCCATTGGCCTCGTGTATTCTCAAGTTGCGTATG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568597 Transmembrane amino acid transporter family protein [Arabidopsis thaliana] | 1603 | 4e-176 |
| XP_002870615 hypothetical protein ARALYDRAFT_493805 [Arabidopsis lyrata subsp. lyrata] | 1593 | 6e-175 |
| AAM63237 amino acid permease-like protein [Arabidopsis thaliana] | 1587 | 3e-174 |
| XP_002509935 amino acid transporter, putative [Ricinus communis] | 1439 | 4e-157 |
| XP_002273161 PREDICTED: hypothetical protein [Vitis vinifera] | 1431 | 3e-156 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LRB5 Lysine histidine transporter 2 | 338 | 8e-031 |
| Q9SR44 Lysine histidine transporter-like 2 | 335 | 2e-030 |
| O22719 Lysine histidine transporter-like 3 | 326 | 2e-029 |
| Q9C9J0 Lysine histidine transporter-like 5 | 318 | 2e-028 |
| Q9C733 Lysine histidine transporter-like 1 | 313 | 6e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L4X4 Amino acid permease-like protein | 1603 | 3e-176 |
| Q8LDF5 Amino acid permease-like protein | 1587 | 2e-174 |
| B9RCQ1 Amino acid transporter, putative | 1439 | 3e-157 |
| B9GXG4 Proline transporter | 1422 | 3e-155 |
| B9GL79 Proline transporter (Fragment) | 1410 | 6e-154 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G41800.1 amino acid transporter family protein | 1603 | 1e-178 |
| AT1G08230.2 amino acid transporter family protein | 753 | 5e-080 |
| AT1G24400.1 LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter | 338 | 7e-032 |
| AT1G67640.1 lysine and histidine specific transporter, putative | 335 | 2e-031 |
| AT1G61270.1 lysine and histidine specific transporter, putative | 326 | 2e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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