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Information for unigene UN12085
| FASTA Sequence |
| Unigene ID: UN12085 | Length: 1023 |
SSR | | CGCATTGAGCTATCTGTCGATTACAAGTTATCATCCTAGAAGACGAACACGATTGTGAAAAAACTTCATCGTGAATTTCCTCTGAG
ATGGAATCGAACTCGGGAAGAGGAAACGAAGCGGAAGTCAATCACAATAATGCTGGTCAGCAGCACCAGCCAATGATGTACGCAGA
GCCTTGGTGGAAGAACAACTCTTTTGGTGTCGAGAGACCTTCTCTAGTTCCATCAAAGTCCTCCTCTTTGGAAGAGTGTCCGTACG
GTTCAGAGTCAAACGATGTTCATTCTGCAGCATCTGAAGACGATGGCGCTTGCAAGGATTCACAAGCTCCAACTTCCTCCCCTTCA
GTAGATAACCATGGAACAGAAGGGAATGATTCACAACTGGCGGCTCCTGTAGGTAACATGTATTGTCAGCAGCAACTTGTACAACC
ACCAGAGCTTGTTGGACACTACATTGCTTGTGTCCCAAATCCATATCAGGATCCATATTATGAGGGAATGGGTGGGATCATATGGA
CATCAGCAATTGGGTTTTCATCCATATCCTGGAATGCCTGGTGAAAGAACAGCACTACCGCTTGACACGACACAAGAACCTGCCTA
TGTGAATGCGAAACAGTACAAGGGAATTTTAAGGCGACGAAAAGCACGTGCCAAGGCCGAGCTAGAAAGGAAAGCAACCAACGGAA
ATCCATATTTTCATGAGTCAAGGCACAATCATGCAATGAGAAGGGCAAGGGTTAGTGGGGGCCGGTTTGCCAAGAAAACAGAGGCT
GAAGTAGCAGCTGAGAGAGAAAGAGAAAGGGGTTTTTCAGCAACCAACTCCTCAGGCGCTGAACCAGTTGAAACAGACTTTAATGA
GACCCTGAATTCTTAAGATGCACCATAATCAATCAAAGCGACACGCTTTGGCTAAAACTGGCAAATTATTCTTGGCTTTTTTTTTT
TCGGTTTTGTGTTTGCTTGCTTGTTCTTGTCAGAGTTTCATAGTGTGTGTGTGTGGGTTCTGGAGTCACAAATGTAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568282 nuclear transcription factor Y subunit A-1 [Arabidopsis thaliana] | 471 | 6e-045 |
| NP_850811 nuclear transcription factor Y subunit A-1 [Arabidopsis thaliana] | 471 | 6e-045 |
| XP_002873581 predicted protein [Arabidopsis lyrata subsp. lyrata] | 461 | 9e-044 |
| NP_566670 nuclear transcription factor Y subunit A-9 [Arabidopsis thaliana] | 314 | 1e-026 |
| BAB01900 CCAAT-binding transcription factor B subunit [Arabidopsis thaliana] | 314 | 1e-026 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LXV5 Nuclear transcription factor Y subunit A-1 | 471 | 3e-046 |
| Q945M9 Nuclear transcription factor Y subunit A-9 | 315 | 3e-028 |
| Q8VY64 Nuclear transcription factor Y subunit A-4 | 213 | 2e-016 |
| Q84JP1 Nuclear transcription factor Y subunit A-7 | 197 | 2e-014 |
| Q93ZH2 Nuclear transcription factor Y subunit A-3 | 191 | 8e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DGV8 AT5G12840 protein | 471 | 4e-045 |
| Q1ECD3 At5g12840 | 471 | 4e-045 |
| C6TD07 Putative uncharacterized protein | 303 | 1e-025 |
| B9GF01 Predicted protein | 286 | 1e-023 |
| A5BU97 Putative uncharacterized protein | 276 | 2e-022 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G12840.1 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor | 472 | 2e-047 |
| AT5G12840.2 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor | 472 | 2e-047 |
| AT5G12840.4 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor | 472 | 2e-047 |
| AT5G12840.3 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor | 472 | 2e-047 |
| AT3G20910.1 NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor | 315 | 3e-029 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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