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Information for unigene UN12093

FASTA Sequence
Unigene ID: UN12093Length: 1035 SSR 
TGACTGCAATTTCTTCATTCAATCTCCTTCTCAAAATCATCAACAATGGAATCCTGGGGAGTTGAAGTTTTGGCAGGGAAGTCAGT
TAAAGTGAAGCCTGATTTTGAAACACTCATCCATGTTCCCAGGCATCACTTGATAAAGGGAAGAAGGGAGAGACCGCTTTGTTGTA
TGTGACGGTTGATGGGAAGAAGCTTGTGATGGGAACCCTCTCTCAAGGCAACATTCCTCAGATTAGCTTCGATCTCGTCTTTGAGA
AAGAGTTTGAGCTTTCCCACAGTTTGGAGAGCGGGAGTGTCCACTTTGTCGGGTACAAATCCCCCAACATGCCCGAAGACGAGGAG
GACTTCTCTGATTCAGAAGAGGAGGAGGAAGCGGCTGCAGTTCCTGCAGCTGTCACTGTCAAGGCTGATGCGAAGCCAAAGGCCAA
GCCTGCCGAGGAAGTGAAGCCTGAATCAGATGATGATGATGATGATGATGAGTCTGGCGAGGAGGATGATTCTGAAGAGGATGGAT
CCGACTCTGAGAAAGGAATGGATGTTGACGAGGATGATTCAGAGGATGAAGATGATTCTGAGGATGAAGATGATGAGACCCCTAAG
AAGCCTGAGGTGGTGTCCAACAAAAAGAGGCCGAATGAATCTGCTGCTTCCAAAGCAGCTATTTCAGCAAAGAAAGCAAAACCAGC
TACACCACACCCAGCTAAAAAGGGTGGAAAGAGTCCTGTGAATGCTAACCAGAGCCCTAAATCTGGAGGTCAATCACCCTCCGGTG
GTGGTGCTAACAAGAAGCAATTCAATTCTGGCAAGCAATTTGGTTCTAACAACAAGGGCAAAGGAAAAGGAAAGGGCAGAGCCTAA
GTTTTGAAGTTGGGAGTTTTGGATGAAAGAAACCGGTTTTTGTTTTTATTTTTATTTTTTGTTGTCTTAAGATTTTTATCTAAATT
GCAATTTTATAACTATTATGTAATTTCAGTATGAAAAGTGCTGGATTGAGAAAGAATACTTTTTTGAATCATGAAACCACTTTACC
ACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872015 predicted protein [Arabidopsis lyrata subsp. lyrata]7352e-075
XP_002527449 Histone deacetylase 2a, putative [Ricinus communis]4627e-044
NP_001105402 histone deacetylase HDT1 [Zea mays]4278e-040
Q9M4U4 RecName: Full=Histone deacetylase HDT3; AltName: Full=Histone deacetylase 2c; Short=HD2c; AltName: Full=Zm-HD2c4223e-039
ACZ54945 type 2 histone deacetylase a [Nicotiana tabacum]4197e-039

Swiss-Prot top hits (Blast detail)Scoree value
Q56WH4 Histone deacetylase HDT25833e-059
O24591 Histone deacetylase HDT14273e-041
Q9M4U4 Histone deacetylase HDT34221e-040
Q6V9I6 Histone deacetylase HDT13647e-034
Q9FVE6 Histone deacetylase HDT13503e-032

TrEMBL top hits (Blast detail)Scoree value
Q3E700 Putative uncharacterized protein At5g22650.27521e-077
B9SN80 Histone deacetylase 2a, putative4625e-044
B8AXI7 Putative uncharacterized protein4438e-042
Q9M4T5 Putative histone deacetylase HD24411e-041
Q0DFD6 Os05g0597100 protein4402e-041

Arabidopsis top hits (Blast detail)Scoree value
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase7535e-080
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase7526e-080
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding3557e-034
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding3451e-032
AT5G63740.1 zinc finger protein-related1495e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  25%
 
102  25%
 
114  50%

Unigene MembersMember information