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Information for unigene UN12093
FASTA Sequence |
Unigene ID: UN12093 | Length: 1035 |
SSR | | TGACTGCAATTTCTTCATTCAATCTCCTTCTCAAAATCATCAACAATGGAATCCTGGGGAGTTGAAGTTTTGGCAGGGAAGTCAGT
TAAAGTGAAGCCTGATTTTGAAACACTCATCCATGTTCCCAGGCATCACTTGATAAAGGGAAGAAGGGAGAGACCGCTTTGTTGTA
TGTGACGGTTGATGGGAAGAAGCTTGTGATGGGAACCCTCTCTCAAGGCAACATTCCTCAGATTAGCTTCGATCTCGTCTTTGAGA
AAGAGTTTGAGCTTTCCCACAGTTTGGAGAGCGGGAGTGTCCACTTTGTCGGGTACAAATCCCCCAACATGCCCGAAGACGAGGAG
GACTTCTCTGATTCAGAAGAGGAGGAGGAAGCGGCTGCAGTTCCTGCAGCTGTCACTGTCAAGGCTGATGCGAAGCCAAAGGCCAA
GCCTGCCGAGGAAGTGAAGCCTGAATCAGATGATGATGATGATGATGATGAGTCTGGCGAGGAGGATGATTCTGAAGAGGATGGAT
CCGACTCTGAGAAAGGAATGGATGTTGACGAGGATGATTCAGAGGATGAAGATGATTCTGAGGATGAAGATGATGAGACCCCTAAG
AAGCCTGAGGTGGTGTCCAACAAAAAGAGGCCGAATGAATCTGCTGCTTCCAAAGCAGCTATTTCAGCAAAGAAAGCAAAACCAGC
TACACCACACCCAGCTAAAAAGGGTGGAAAGAGTCCTGTGAATGCTAACCAGAGCCCTAAATCTGGAGGTCAATCACCCTCCGGTG
GTGGTGCTAACAAGAAGCAATTCAATTCTGGCAAGCAATTTGGTTCTAACAACAAGGGCAAAGGAAAAGGAAAGGGCAGAGCCTAA
GTTTTGAAGTTGGGAGTTTTGGATGAAAGAAACCGGTTTTTGTTTTTATTTTTATTTTTTGTTGTCTTAAGATTTTTATCTAAATT
GCAATTTTATAACTATTATGTAATTTCAGTATGAAAAGTGCTGGATTGAGAAAGAATACTTTTTTGAATCATGAAACCACTTTACC
ACC
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GenBank top hits (Blast detail) | Score | e value |
XP_002872015 predicted protein [Arabidopsis lyrata subsp. lyrata] | 735 | 2e-075 |
XP_002527449 Histone deacetylase 2a, putative [Ricinus communis] | 462 | 7e-044 |
NP_001105402 histone deacetylase HDT1 [Zea mays] | 427 | 8e-040 |
Q9M4U4 RecName: Full=Histone deacetylase HDT3; AltName: Full=Histone deacetylase 2c; Short=HD2c; AltName: Full=Zm-HD2c | 422 | 3e-039 |
ACZ54945 type 2 histone deacetylase a [Nicotiana tabacum] | 419 | 7e-039 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q56WH4 Histone deacetylase HDT2 | 583 | 3e-059 |
O24591 Histone deacetylase HDT1 | 427 | 3e-041 |
Q9M4U4 Histone deacetylase HDT3 | 422 | 1e-040 |
Q6V9I6 Histone deacetylase HDT1 | 364 | 7e-034 |
Q9FVE6 Histone deacetylase HDT1 | 350 | 3e-032 |
TrEMBL top hits (Blast detail) | Score | e value |
Q3E700 Putative uncharacterized protein At5g22650.2 | 752 | 1e-077 |
B9SN80 Histone deacetylase 2a, putative | 462 | 5e-044 |
B8AXI7 Putative uncharacterized protein | 443 | 8e-042 |
Q9M4T5 Putative histone deacetylase HD2 | 441 | 1e-041 |
Q0DFD6 Os05g0597100 protein | 440 | 2e-041 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase | 753 | 5e-080 |
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase | 752 | 6e-080 |
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding | 355 | 7e-034 |
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding | 345 | 1e-032 |
AT5G63740.1 zinc finger protein-related | 149 | 5e-010 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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