RadishBase

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Information for unigene UN12107

FASTA Sequence

Unigene ID: UN12107	Length: 1191	SSR
GGGTATCTCTCTCTTCTTCTTCTTCTTGAGAAGAGACTCTCAACACTTTCTCTCTATCAATCAATGGAGTTTCATCTCGAACACCC TCTCTCACATTCTTCTCCTTCTTCTTCTTCTATCCACAACAACGACGAAACAAACAACGATAATTCGTTGTTACCACCAAACTCTC TCTTCCTCGTCGAACTACAACACATGCCTTCTCCTCATTACTTCCTTACCCTCAAGTCCTCTGCTTCTCTTCTATCTAATCGAAAC CACGCTGTTTCTTCAGCCATTCAGTATTCAAGAAAACTCGACGACCCATCTCTCACGTATCTTGCTGTGAATTATCTAGACAGGTT CTTATCCAGCGAAGATATGATGCTGCAATCAAAGCCTTGGATTCTCAAGCTCATCTCTCTTTCTTGTGTCTCTTTGTCTTCTAAAA TGAGAAAGTCAGATATATCTGTCTGTGATCTTCCGGTGAAGGGTGAGATGTTTGATGCTCAGATGATAGAGAGAATGGAGAATGTG ATCTTAGGAGCTCTTAAATGGCGAATGCGCTCTGTTACTCCTTTCTCCTTTCTCTCCTTCTTCCTTAGCCGTCTCTTTGAGCTCAA AGAAGATCATTCACTACTTAAACATTCCCTCAAAGCTCAAGCTACTGATCTCACTTTCAGTCTTCAACATGATATCAAGTTCCTGG AGTTTAAACCATCAGTGATTGCAGCAGCTGCACTTCTCTTTGCTTCTTCTGAGCTCTGTCCTCTACAGTTTCCATATTTCAGTAAC AGAATCTGCCAATACACATATGTAAATAATGATGAGCTAATGGAGTGTTACACGGCGATGCAAGAGAGAGATGTAGTTGGAGACAA CGAAGGAAGCAATGACACAGCAGTTAATGTGCTTGACCAGCAATTCTCTAGCTGTGAAGAAAGTGCAATCACAGCTTCTTCACCTA AGAGGAGGAGAACTAGTACTACTCACCGATGTTAAGCTGAGAATGTGGTTTGGTTTAATGGTCAGATATAATTTCCAACCAATGCA ATCACTTCAAAACCACTTATGATGGTCCCCTTTTGAAAGAGACACTTTCCTCTTCCTTCCTTCCTTCTTCTCTGCTTCAAAATAAG CCATTACTCTCTTCATGGAAGATAAGAGAGTGATGAATGATCAAACGCCATATCTTAGGCTCCCTTTGGACCA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002872788 CYCD6_1 [Arabidopsis lyrata subsp. lyrata]	1131	2e-121
NP_192236 cyclin D6-1 [Arabidopsis thaliana]	1099	1e-117
XP_002326106 predicted protein [Populus trichocarpa]	584	6e-058
XP_002276869 PREDICTED: hypothetical protein [Vitis vinifera]	538	1e-052
CBI18003 unnamed protein product [Vitis vinifera]	538	1e-052

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZR04 Putative cyclin-D6-1	1132	8e-123
Q69S43 Cyclin-D6-1	385	3e-036
Q8LHA8 Cyclin-D2-2	306	5e-027
Q8H339 Cyclin-D1-2	278	8e-024
Q8LGA1 Cyclin-D4-1	269	9e-023

TrEMBL top hits (Blast detail)	Score	e value
A8Y921 D6-type cyclin	584	4e-058
C6T7L9 Putative uncharacterized protein	535	2e-052
A8Y919 D6-type cyclin	520	1e-050
A8Y920 D6-type cyclin	507	4e-049
B9SFD7 Cyclin d, putative	472	4e-045

Arabidopsis top hits (Blast detail)	Score	e value
AT4G03270.1 CYCD6;1 (Cyclin D6;1); cyclin-dependent protein kinase	1132	7e-124
AT5G65420.1 CYCD4;1 (CYCLIN D4;1); cyclin-dependent protein kinase regulator	269	8e-024
AT1G70210.1 CYCD1;1 (CYCLIN D1;1); cyclin-dependent protein kinase regulator	261	7e-023
AT2G22490.1 CYCD2;1 (Cyclin D2;1); cyclin-dependent protein kinase regulator/ protein binding	241	1e-020
AT5G10440.1 CYCD4;2 (cyclin d4;2); cyclin-dependent protein kinase	235	7e-020

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			67%


11	1			33%

Unigene Members	Member information