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Information for unigene UN12178

FASTA Sequence
Unigene ID: UN12178Length: 1002 SSR 
GGAATCAAACTTAACAGTTCTGCTGTCACAACTCGAGAGACCAAGAAGCAATAGATCTAACACAGCAACTAGTAATTTAGAGCTAA
GAATTCAGGGAGAGAGAGAGAGAGGATGGATAAGATGAATCAGGCTTTCGAGAAGATGAAGATGTTGGTGGGTATGGAGGTTGAAG
ACGAGGAACGAGCTGCCGAAGAAGAAAGCTCTCTCTCATTCATGGAAGATCTTAATCGTAATTGCGCTTTGACTACCAAACAGAGA
TTCTATGGATTTGCGATTTGCTTGTCAGCTGGCTTGGCATGTACTCTTTTGTCAATGCTTGTTTTCTTCAATCCGATCAAGTTTGG
TTTCACATTCACTCTTGGAAATTTGATGGCACTTGGGAGGTCCGTATTGGATTTTTTTTTTTAATTTAGCTTGTAACATTACAAGT
CTCTGTGAACAAGTATTTTATCCATTTCAACTGTTTTACTCTCTCTACTCATAGATTTTAAGTTCCATGTCGTTTTTGTATGGCAG
CACAGCATTCCTTATAGGCCCACAGAGGCAGGTCTCGATGATGCTTGACCCAGCTCGCATCTACGCTACTGCTTTGTATCTTGCCA
GCATTATCATTGCCTTGTTTTGCGCTCTCTATGTTCGTAACAAGCTGCTGACGCTACTTGCTATCATTCTTGAGTTCTCTGGTCTA
ATATGGTATAGCTTGAGCTACATCCCTTTTGCAAGGACCATGGTCTCAAAGGTGTTCATGACTTGTTTCGACACCGAGTTTTGAGC
ACAGCTCCTATACCCATCAAGGATTTGTCGTCCCAAAACCAGTGTGCTCTGTTCTAATGATCGGTCTGTGTTCAAAGCTGGACTTG
TTTGATGCACGAAGAATGCTGAAAGCTCTGATAGTCTTTGGTTTCTATTTTGCTTCTTAACATGAACTTCATGTCTTCACAACTCG
CAGCACGGTTTATTGTATATTTTGCTGTGGAATATAACGTAAATTTTGTGCGGGGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874136 hypothetical protein ARALYDRAFT_489217 [Arabidopsis lyrata subsp. lyrata]4384e-041
NP_197746 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana]4322e-040
XP_002518017 Vesicle transport protein SFT2B, putative [Ricinus communis]3892e-035
XP_002270756 PREDICTED: hypothetical protein [Vitis vinifera]3864e-035
XP_002305352 predicted protein [Populus trichocarpa]3821e-034

Swiss-Prot top hits (Blast detail)Scoree value
Q4FZV2 Vesicle transport protein SFT2B1872e-013
Q8VD57 Vesicle transport protein SFT2B1863e-013
O95562 Vesicle transport protein SFT2B1811e-012
Q5SSN7 Vesicle transport protein SFT2A1739e-012
Q5U3Y5 Vesicle transport protein SFT2A1739e-012

TrEMBL top hits (Blast detail)Scoree value
Q9LT07 Putative uncharacterized protein At5g235504321e-040
B9RW98 Vesicle transport protein SFT2B, putative3891e-035
B9H430 Predicted protein3829e-035
C6T0X3 Putative uncharacterized protein (Fragment)3747e-034
B4FG59 Putative uncharacterized protein3551e-031

Arabidopsis top hits (Blast detail)Scoree value
AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).4328e-043
AT5G24170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).2751e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  33%
 
62  67%

Unigene MembersMember information