 |
Information for unigene UN12178
| FASTA Sequence |
| Unigene ID: UN12178 | Length: 1002 |
SSR | | GGAATCAAACTTAACAGTTCTGCTGTCACAACTCGAGAGACCAAGAAGCAATAGATCTAACACAGCAACTAGTAATTTAGAGCTAA
GAATTCAGGGAGAGAGAGAGAGAGGATGGATAAGATGAATCAGGCTTTCGAGAAGATGAAGATGTTGGTGGGTATGGAGGTTGAAG
ACGAGGAACGAGCTGCCGAAGAAGAAAGCTCTCTCTCATTCATGGAAGATCTTAATCGTAATTGCGCTTTGACTACCAAACAGAGA
TTCTATGGATTTGCGATTTGCTTGTCAGCTGGCTTGGCATGTACTCTTTTGTCAATGCTTGTTTTCTTCAATCCGATCAAGTTTGG
TTTCACATTCACTCTTGGAAATTTGATGGCACTTGGGAGGTCCGTATTGGATTTTTTTTTTTAATTTAGCTTGTAACATTACAAGT
CTCTGTGAACAAGTATTTTATCCATTTCAACTGTTTTACTCTCTCTACTCATAGATTTTAAGTTCCATGTCGTTTTTGTATGGCAG
CACAGCATTCCTTATAGGCCCACAGAGGCAGGTCTCGATGATGCTTGACCCAGCTCGCATCTACGCTACTGCTTTGTATCTTGCCA
GCATTATCATTGCCTTGTTTTGCGCTCTCTATGTTCGTAACAAGCTGCTGACGCTACTTGCTATCATTCTTGAGTTCTCTGGTCTA
ATATGGTATAGCTTGAGCTACATCCCTTTTGCAAGGACCATGGTCTCAAAGGTGTTCATGACTTGTTTCGACACCGAGTTTTGAGC
ACAGCTCCTATACCCATCAAGGATTTGTCGTCCCAAAACCAGTGTGCTCTGTTCTAATGATCGGTCTGTGTTCAAAGCTGGACTTG
TTTGATGCACGAAGAATGCTGAAAGCTCTGATAGTCTTTGGTTTCTATTTTGCTTCTTAACATGAACTTCATGTCTTCACAACTCG
CAGCACGGTTTATTGTATATTTTGCTGTGGAATATAACGTAAATTTTGTGCGGGGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874136 hypothetical protein ARALYDRAFT_489217 [Arabidopsis lyrata subsp. lyrata] | 438 | 4e-041 |
| NP_197746 Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] | 432 | 2e-040 |
| XP_002518017 Vesicle transport protein SFT2B, putative [Ricinus communis] | 389 | 2e-035 |
| XP_002270756 PREDICTED: hypothetical protein [Vitis vinifera] | 386 | 4e-035 |
| XP_002305352 predicted protein [Populus trichocarpa] | 382 | 1e-034 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q4FZV2 Vesicle transport protein SFT2B | 187 | 2e-013 |
| Q8VD57 Vesicle transport protein SFT2B | 186 | 3e-013 |
| O95562 Vesicle transport protein SFT2B | 181 | 1e-012 |
| Q5SSN7 Vesicle transport protein SFT2A | 173 | 9e-012 |
| Q5U3Y5 Vesicle transport protein SFT2A | 173 | 9e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LT07 Putative uncharacterized protein At5g23550 | 432 | 1e-040 |
| B9RW98 Vesicle transport protein SFT2B, putative | 389 | 1e-035 |
| B9H430 Predicted protein | 382 | 9e-035 |
| C6T0X3 Putative uncharacterized protein (Fragment) | 374 | 7e-034 |
| B4FG59 Putative uncharacterized protein | 355 | 1e-031 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | 432 | 8e-043 |
| AT5G24170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). | 275 | 1e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
