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Information for unigene UN12200
FASTA Sequence |
Unigene ID: UN12200 | Length: 985 |
SSR | | AAGAGAGAGAGAGAGAGAGCGATCACAGGCGAATTGAGCACTTTGTTTCTCTTGTGGGATCATACAGAGTGAGTGATAATGGGGAG
GAGCTATAGTTACAGTCCATCACCACCAAGGAGAAGGTACAGAAGCCCAAGTCCCGTGGGACACTACAGAGGTCGGAGTAGAGATC
CCCCAACCAGTCTACTTGTTCGCAATCTCCGGCTCGACTGTCGGCCGGATGATCTCCGTAGACCATTTTGGCGGTTTGGTCGTCTC
AAGGATATCTACATACCTCGTAACTATTACACTGGGGAGCCTCGCGGATTTGGCTTTGTTCAGTACTATGATCCTGCTGATGCTGC
AGATGCAAAGTATCATCTGGATGGCTATGTTCTTCTAGGCCGTGAAATCACTGTGGTATTTGCAGAGGAGAACAGAAAGAAGCCTT
CTGAAATGAGAGAACGATCAAGGGGAAGAACATCTACAAGATCTCCATATGGTTACTCCCGGTCTCCTGGCTATTCACGTTCGCCA
AATTACAGGAGGAGCTACTCACGTTCGCCAGTCTACAGGAGAAGCTATTCACGTTCACCATATGATGAAAGGCACCGTTCAAGATC
TGTTTCACCGGGAGACAGGAGGCGATCGTACTCAAGGTCAAGCTCAAGATCTCGCTATGAGTCGAGAAGCCAGAGTCCTGGATACT
CACGCTGATTTGCTATATGACCCAAGAATGTGAAGATGGGGTGTGGTCTCTCTCACACTCTGCTTGTTTAGTTCATGTATGAAAAA
GATAATAAACCATAGTTTGGAGTTAGAGGACAAACGTATCTATGGTTTGGTTTCCTTAGTACTTAGTGGCAGCCTTTTGTATGTTC
ACGCGTGACATCTATGCCTACTTATTGTGTTGTATCACGAGAGAGTTCAGATTCTCATTAGTCACTACAATATGAAATCTGGAACG
TATTATAACCACGAAAGCTCTTTATTGGGTAATTTTCAG
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GenBank top hits (Blast detail) | Score | e value |
XP_002531582 serine/arginine rich splicing factor, putative [Ricinus communis] | 668 | 8e-068 |
ABF96206 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] | 647 | 2e-065 |
NP_001173443 Os03g0374575 [Oryza sativa Japonica Group] | 646 | 3e-065 |
AAP46199 putative splicing factor [Oryza sativa Japonica Group] | 644 | 5e-065 |
XP_002465213 hypothetical protein SORBIDRAFT_01g034200 [Sorghum bicolor] | 640 | 1e-064 |
Swiss-Prot top hits (Blast detail) | Score | e value |
O75494 Splicing factor, arginine/serine-rich 13A | 322 | 5e-029 |
Q9R0U0 Splicing factor, arginine/serine-rich 13A | 322 | 5e-029 |
Q8WXF0 Splicing factor, arginine/serine-rich 13B | 298 | 3e-026 |
P30352 Splicing factor, arginine/serine-rich 2 | 293 | 1e-025 |
Q3MHR5 Splicing factor, arginine/serine-rich 2 | 288 | 4e-025 |
TrEMBL top hits (Blast detail) | Score | e value |
B9T013 Serine/arginine rich splicing factor, putative | 668 | 6e-068 |
Q10KQ7 RNA recognition motif family protein, expressed | 647 | 2e-065 |
C7J0R1 Os03g0374575 protein | 646 | 2e-065 |
B8AQ95 Putative uncharacterized protein | 644 | 3e-065 |
Q7Y171 Putative splicing factor | 644 | 3e-065 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 586 | 1e-060 |
AT1G55310.1 SR33; RNA binding / protein binding | 577 | 1e-059 |
AT1G55310.2 SR33; RNA binding / protein binding | 577 | 1e-059 |
AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 415 | 7e-041 |
AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 382 | 5e-037 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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