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Information for unigene UN12206

FASTA Sequence
Unigene ID: UN12206Length: 1153 SSR 
GGGACGAACAACAAACAAACAAACAATGGCCTTCTCTCCTAATCCTCTCTCTCTAAGCGTTCCCGATCCTGCTTTCGAATCCTGCT
CCGTGACTCCGGCTACCTCGACCTCCTCGATCACCGCACCTCCGCCGCAGCAGCTGCAGCCGCCGCCCCCGCCTCCTCCTCATCAT
CATCCTCAGCTGCCGCTGCCGCGCCTTCTTCAGCCTCCGACGACGTCGTCTCCTCCATAACCGGCGGCTTCTTCGCCTCTCTGCTG
TCCCGTCTCGTCACCGTCTCGTCTCTTCTGACAATCAACCCCTTCTCAAAGCTCTCCGCCGATGACTTCTCAGGCGATACGCCTCC
GTGGACCACGGGCTTCTTCGGCGCGTGTGGCTCGTACTCGTTCCCGTCGTCTTCTCAGCAGGCGAGGATGAGGGTTCACGAGAATA
TCAAGAGGTTCGCTAGGAATTACGCTACGCTCTTCATCGTCTTCTTCGCTTGTGCATTGTATGTGGGTTTCTCTCTCTCTCTCTCT
GTTTACGTTGTAAAGTTAAGAACTTTGACAGTGTTGGTGTTTCTTTTGTCTCTCTCTCTCTCTTGTGTGGGTTTTGTAGATATCAG
ATGCCACTTGCATTGGTGGGGTTGTTAGCAAGTTTAGCACTTTGGGAGCTCTTCAAGTACTGTAGTGACAGGTGGAAGTTTGATCG
TCACCCTTCTGCTCGGAAACTCGTCATCGGTATTGGACAGTGCGCGACTGCGGTTCTTCTGACGTTTCTGAATGTCCAAATGGCTC
TTTTCTCTGCTCTTGCTGTCAGTTATTCAGTAATGCTATTACACGCCGGGTTCAGGAAGCTCACTCCCTCCAAGAAACCTTCTCGA
GGAAGATAAAAGACTGTATCAAGACAATAGTTTTGTATTTGGCAATGAGATTCTTTAGTAGTTTTGGTAGCTCAAAACCGGCGAGA
GACAAACAAGAAACAGAACAGCAGCAAAGCTAAGATGGTGGATTAAGCAAGTTCGAATGTTAGACATCACACAACTTGTAATAAGT
AAAAGACAGACTTTATGATTGGTGAGGATATATAGTTTACTTTAGTAAATGATATATTGTTTTAACCCATCACAAGTATGTCATAG
CATCATCTACGTCTATATTGTCACTCATACTGATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867498 hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata]6052e-060
CAB38266 hypothetical protein [Arabidopsis thaliana]5892e-058
NP_567776 PRA1-like protein H [Arabidopsis thaliana]5892e-058
XP_002532934 conserved hypothetical protein [Ricinus communis]4252e-039
XP_002329116 predicted protein [Populus trichocarpa]3892e-035

Swiss-Prot top hits (Blast detail)Scoree value
Q8LFP1 PRA1 family protein H5897e-060
O81765 Pollen-specific leucine-rich repeat extensin-like protein 41301e-006
P13983 Extensin1246e-006
P21997 Sulfated surface glycoprotein 1851237e-006
Q9Z0G8 WAS/WASL-interacting protein family member 31237e-006

TrEMBL top hits (Blast detail)Scoree value
B9T3W5 Putative uncharacterized protein4251e-039
B9N1E1 Predicted protein3892e-035
A5AHG6 Putative uncharacterized protein3731e-033
B4UW96 Putative uncharacterized protein (Fragment)3327e-029
B9HZS0 Predicted protein3192e-027

Arabidopsis top hits (Blast detail)Scoree value
AT4G27540.1 PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)5896e-061
AT4G33970.1 protein binding / structural constituent of cell wall1301e-007
AT1G62760.1 invertase/pectin methylesterase inhibitor family protein1291e-007
AT3G19430.1 late embryogenesis abundant protein-related / LEA protein-related1291e-007
AT1G12040.1 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); histidine phosphotransfer kinase/ protein binding / structural constituent of cell wall1263e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
114  100%

Unigene MembersMember information