Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN12237

FASTA Sequence
Unigene ID: UN12237Length: 771 SSR 
GGAATTCTCTTGCCGGCTGTTTTGTCCGCCGAACATTCATCCGGCCACGCAGAGATTCAAAATTTCACAAAACGGAAGTCTTCGGA
TCAGAGATTTATACTCTTTAGATCCGGAAGAAGAAGAAGAAGATGACGGTGATCGACATTCTGACTAGAGTTGACTCGATCTGTAA
GAAGTACGACAAGTACGATGTCGACAAACAGCGTGACGCCAATGTCTCTGGTGATGATGCTTTCGCTCGTCTCTATGGCGCTTTCG
AAGAACAAATCGTGACTGCTCTCGAGAAAGCTGAACTTGTTACCAAGGAGAAGAACAGGGCTTCTGCTGTTGCGATGAACGCTGAA
ATACGCAGGACTGAGGCTAGGTTGTCTGAGGAAGTTCCAAAGTTGCAGAGACTTGCTGTTAAGCGGGTCAAGGGCCTTACAACCGA
AGAGCTTGCTGCTAGAAATGATTTGGTGCTTGCGCTTCCAGCTAGGATTGACGCTATACCTGATGGAACAGCTGGTGGCCCTAAAG
CCACCAGTGCTTGGGCTCCCTCAACAGCATCTCGTCCTGATATCAAATTTGATTCAGATGGGCGTTTTGATGATGATTACTTTCAA
GAATCACATGAATCTAGCCAGTTCAGACAGGAGTATGAGATGCGGAGAATCAAGCAGAGCAAGTCTGGACATGATCTCCGAAGTTT
AGATGCTTTGAAGATATGGCGTCTGATATGACGAGGAGCTGGATAGCAGTCCTCTGATGGATGAATCGACTCCAGTGGACAGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566354 syntaxin-71 [Arabidopsis thaliana]8398e-088
XP_002882636 hypothetical protein ARALYDRAFT_897138 [Arabidopsis lyrata subsp. lyrata]8398e-088
XP_002519551 syntaxin, putative [Ricinus communis]6856e-070
XP_002280272 PREDICTED: hypothetical protein [Vitis vinifera]6821e-069
XP_002322868 predicted protein [Populus trichocarpa]6677e-068

Swiss-Prot top hits (Blast detail)Scoree value
Q9SF29 Syntaxin-718394e-089
Q94KK6 Syntaxin-725446e-055
Q94KK5 Syntaxin-735383e-054

TrEMBL top hits (Blast detail)Scoree value
Q2HIU8 At3g097408396e-088
B9S0N2 Syntaxin, putative6854e-070
B9IJ24 Predicted protein6675e-068
B9MTA6 Predicted protein6471e-065
C6TI87 Putative uncharacterized protein (Fragment)6471e-065

Arabidopsis top hits (Blast detail)Scoree value
AT3G09740.1 SYP71 (SYNTAXIN OF PLANTS 71); protein transporter8393e-090
AT3G45280.1 SYP72 (SYNTAXIN OF PLANTS 72); protein transporter5445e-056
AT3G61450.1 SYP73 (SYNTAXIN OF PLANTS 73); protein transporter5383e-055

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  50%
 
71  50%

Unigene MembersMember information