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Information for unigene UN12265

FASTA Sequence
Unigene ID: UN12265Length: 857 SSR 
GAATGACAAAACTACAGAGTCAGGTTAAGAATTTGAAACAGAAATGTAATAATCAAGGAACAGAGATCCAAAGATTCCAAAAAGCA
GCTAAAGAAGCTTTTGAATTAGCTGCTAAGCAATCTTCTAAACATAAATCAGCAACAGAAGCCCTAAAAACTGTGGCAGAACAGTT
GAAAGGGTTGAAGGAGAAATTACCACCTGAAGTATCAGAGAGTGAAGCTTTTGAGTCCATTAACTCTCAGGCTGAAGCTTATCTAA
AGGCAAACGAAGTAACAGAAACATCTGTACTTACAACTTCGATACTTGATCAACAAGAAACATCTCCTACTGGAAACACACAAGAT
CAAAAGATTGATGAACAAGTATCATCTAACTCAAGTATATCCGAGACATCAAAGCCAGTGCCGACAGAATCTTCTTCATCATCATC
ATCAAGAACAGGTGGAAAAGAAAGTAAAGAACAGTTTGAACCTGGTGTTTATGTGACTTTTGCGGTAGATACGAATGGTGACAAGA
TCTTCCGACGAGTTAGATTCAGTAAAAAGAGATTTGACGAACATCAAGCAGAAGATTGGTGGACTAAAAACAAAGATAGGTTGCTA
AAATGGTATAGTCCAAATTCATCATCAAGTCCAATGGCTTCTGATTCATCTATTGCTCCTCCACCACCATCTGAGACTGAACCACC
GTCCGATTCATCAGTCCCTGAGACGGACAATGAGGCAGAACCAGATTCTGAAGTATAACCATGTGTGTTAGTTATATGATTGTTTT
TTGTTTTTTTTCAATGAGTACCAGTTATAGAGACAAAACGAAGTACCTGTGGTTTTGTTCTTAAAGTATCTGGAAAGGAACGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883417 regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata]8112e-084
XP_002868286 hypothetical protein ARALYDRAFT_493465 [Arabidopsis lyrata subsp. lyrata]7117e-073
CAB10216 disease resistance N like protein [Arabidopsis thaliana]5763e-057
NP_001154232 regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]5512e-054
NP_188968 regulator of chromosome condensation-like protein with FYVE zinc finger domain [Arabidopsis thaliana]5055e-049

Swiss-Prot top hits (Blast detail)Scoree value
Q8GZ92 Protein Brevis radix-like 41532e-009
Q17TI5 Protein BREVIS RADIX1478e-009
O82281 Protein Brevis radix-like 11423e-008
Q8GYL9 Protein Brevis radix-like 21396e-008
Q5HZ09 Protein Brevis radix-like 31352e-007

TrEMBL top hits (Blast detail)Scoree value
O23293 Disease resistance N like protein5762e-057
Q9LTC2 Chromosome condensation regulator-like protein protein4822e-046
B9T5E9 Ran GTPase binding protein, putative2788e-023
B9HKH0 Predicted protein2383e-018
O49281 F22K20.5 protein1882e-012

Arabidopsis top hits (Blast detail)Scoree value
AT3G23270.1 regulator of chromosome condensation (RCC1) family protein8296e-089
AT4G14368.1 zinc ion binding5761e-059
AT5G19420.1 Ran GTPase binding / chromatin binding / zinc ion binding2516e-022
AT1G65920.1 regulator of chromosome condensation (RCC1) family protein / zinc finger protein-related2113e-017
AT1G76950.1 PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding1881e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information