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Information for unigene UN12277

FASTA Sequence
Unigene ID: UN12277Length: 1151 SSR 
CTTCCTTCCTCTCTCTCTCTCTCTCTCTATCCACCGCCATGGCCTCCTTCTCCATCATCTCAAAGCTCCCTCTCATCCTCTTAACC
ACCTCCATAGCCACCGCATTACCCGACAACAAACCCGTCTCGGGTCAAATAAACTCCAACTCCGTCCTCGTAGCTCTCCTCGACTC
TCACTACACCGAGCTAGCCGAGCTAGTAGAGAAAGCCCTCCTCCTCCAAACCTTAGAAGAAGCTGTCGGTCGACACAACATCACAA
TCTTCGCACCGCGCAACGATGCCTTGGAACGTGACCTCGACCCTCTCTTTAAATCTTTCTTGCTCGAACCAAGAAACCTCAAATCG
TTACAAACGCTCCTCATGTTCCACATTCTCCCTCGCCGTGTCTCCTCACCTCAATGGCCTTCTCTCTCTCGTCATCACCACCGTAC
TCTCTCCAACAACCATGTCCACCTCACCGTCGTCGACGCTCCCACCCTCCGGTTAAAAGTAGACTCCGCAGAGATCGTCCGTCCCG
ATGACGTCATTAGACCCGATGGGATCATCCATGGGATCGAACGTCTCCTCATCCCTCGCTCGGTTCAAGAAGCTGATGGCTCTGTT
AAGTTCGGACACGGTGAAGGCTTTGCTTATTTGTTTGACCCTGATATATACATCGACGGTCGGATCTCGGTTCAGGGTATTGATGG
AGTCTTGTTTCCGGTGGAGGAGACTCGGGCGACGGAGATAAAACCGGCATTTCCGGTTGTTAAGAAAGTAGTTAAATCTTTGATCA
AAAAAAAAGAAAGTAGTTAAATCAAGAAGAGGTAAATTGATGGAGGTAGCTTGTAAAATGATGGGATCGCGGTTTACCTCGTGCCA
ATGATTTTACACGTTATGAACAAAACAAAATAAGCCAGAACTTTCAAATTCTTGAATCTGTAAACATCCGAAGAACAGAATTGAAT
ATGTAAATGATGTAATTTTGGTTCGATGCAGTTTTCATGTTCTTTTTGTAATTTTTATATTAAAAGTATATACAAAATACATGGAC
GGTAGATTTTGATGAAGTTTGTTATATGGGGGGCGTGAGAAGGGTAGTAGGAGTTAGAGACATCAATGTAATACACGTTATGTAAG
TATATTTTCTATACTAATAAAGTAAGCTTTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002879581 predicted protein [Arabidopsis lyrata subsp. lyrata]7665e-079
AAD21471 unknown protein [Arabidopsis thaliana]7631e-078
NP_850253 fasciclin-like arabinogalactan protein 16 [Arabidopsis thaliana]7631e-078
XP_002524094 conserved hypothetical protein [Ricinus communis]5935e-059
XP_002871217 beta-Ig-H3 domain-containing protein [Arabidopsis lyrata subsp. lyrata]5783e-057

Swiss-Prot top hits (Blast detail)Scoree value
Q8RWC5 Fasciclin-like arabinogalactan protein 167634e-080
Q9FT45 Fasciclin-like arabinogalactan protein 156273e-064
Q66GR0 Fasciclin-like arabinogalactan protein 175701e-057
Q93W32 Fasciclin-like arabinogalactan protein 185403e-054

TrEMBL top hits (Blast detail)Scoree value
B9SDM5 Putative uncharacterized protein5934e-059
A9XTL9 Fasciclin-like arabinogalactan protein 145711e-056
B9H9M6 Predicted protein5503e-054
B9IIH5 Predicted protein5307e-052
C5WY51 Putative uncharacterized protein Sb01g0057705272e-051

Arabidopsis top hits (Blast detail)Scoree value
AT2G35860.1 FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)7634e-081
AT3G52370.1 FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)6272e-065
AT5G06390.1 FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR)5709e-059
AT3G11700.1 FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR)5403e-055
AT5G05650.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) (TAIR:AT5G06390.1); Has 71 Blast hits to 71 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1326e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information