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Information for unigene UN12327
| FASTA Sequence |
| Unigene ID: UN12327 | Length: 1555 |
SSR | | CTAAATCTCTCTTTTTGTTTTGGTTTTGACATTTTAGGTTCATTATTAATTTTATTGTCCATAGTTCTTGTTGATGCAAATGGTTA
GTACCTATTGGTTTGGCTTGGTCTCTGTGTTTATGTAATTAATAAAACAGAGTCTAGTGAATGATTATCATATTTTGTTTAACCTC
AAATGACTTTAACCAATTCTTCATTCTCTCCAGTCTTATGATGTCTCTGAATGGACATTTAACAGCAAGAGCCATTTCGGACTCTA
ATGGATCATCATCTACTACGGCTTGTCCCTAATCCTTCTTCCTGTTCTCATCTTGCTCAGTCACATCATAGATGTTTCAGCAACTT
AACATCAGCCAGTTAAGACAGGAGACAGAGTCTCAGCAGAACCTGAATCAAATGGATAGAGTAGACAGGCTGTTGAGGTGTTGGCT
AGATCAAAGGATTGGAGAGTTTTTTTAGTTGCATATCAACTAATCAAACTATTTTTTTTTGTCAATGTCCAAGTCTATTGAATTAT
GTATATTACACATATGAAAAGATCTAGTTTTACATTTACAGTATTTTATCTTAGAAAGATAGAAGAAACAATTTCAATTCATGGTA
TATTTGTAATGGAAGGAGGCTCAAGAGATCGAGGTTCAGACAGAGATTCTCTGCTTTTTTTATCTCTATATTCGTCCCTACTGTAG
TTCACAGGCCGGGCCTCATTTTAGGCCTAATAAAAAGCATTCCATGAATTCCAATTTTTTTAATCATGAAACTATAGTTAACGGGC
CAGGCCTTTATATGAATACAATCGGGTCTGTAGAAATATCTAAAACCCTAAACATTATCGGCACTCTTAATTCATTTTTTGTGTGT
GTGTGGCGACGAAGGAGCTTGTTAGCCATGTCCGACGTAGTAGCTGATGCTGAGCTCGCGGCGGAGACAAGTGTTAAAGAAGATGC
AAAGGCTGTATTGGAGACGGTTCAATCGACGAAGCAGTTCTCAGTATATGAAGCGAGTTCGGAGGAACTTATAGAACGATCGATGG
CTCCTATTAAAAAAGAGTTCCTATGTCCTCCTCCTCCAAGCCGTAACCTGAAGCAAAGTGACGTTAAGGCGGCGCCTCCTCATCCG
AGCTTAGTCCAGGAGAAGAAATCGAAGAGACAGCTCAAAAGGGAACGCCGTGAGAAATGTGCGATAAACCTGTGTCCACAGGTTTC
GAGAACAGAAGACGTTGATTCCTGTCAGTACAAAGAGAAATGCCGATTTAATCATGACATTGAAGCTTTCAAAGCTCAGAAACCTG
ATGATATAGAGGGGCAATGCCCATTTGTGGCCTCTGGAATGAAGTGCCAATATGGTTTATCATGCCGATTCTTAGGCACTCACACA
CATGTTTCTGATGAGAACCAAATCTCTGAGATTAACGTTTTTAACAAAGGCAAAATCTGAGACTCCTGAACTTGGAGATATTAATG
ATGGGGTGAAATGTGGATGATAACACGGAAAAGAACGGGCATTCTACTTCAAAAGCCAAATTAGAGGATGAGGCTAGCATCAAAGT
TGTCGAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_195600 tRNA-dihydrouridine synthase 3-like protein [Arabidopsis thaliana] | 676 | 2e-068 |
| XP_002868869 dihydrouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] | 669 | 1e-067 |
| XP_002513011 tRNA-dihydrouridine synthase, putative [Ricinus communis] | 410 | 1e-037 |
| CBI37975 unnamed protein product [Vitis vinifera] | 370 | 6e-033 |
| XP_002275411 PREDICTED: hypothetical protein [Vitis vinifera] | 370 | 6e-033 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9T0J6 tRNA-dihydrouridine synthase 3-like | 365 | 9e-034 |
| Q7XT07 tRNA-dihydrouridine synthase 3-like | 322 | 9e-029 |
| Q6BS64 tRNA-dihydrouridine synthase 3 | 153 | 4e-009 |
| Q5ALL3 tRNA-dihydrouridine synthase 3 | 152 | 5e-009 |
| A3LUK5 tRNA-dihydrouridine synthase 3 | 149 | 1e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RG59 tRNA-dihydrouridine synthase, putative | 410 | 9e-038 |
| A2XPT3 Putative uncharacterized protein | 330 | 2e-028 |
| B9HRE6 Predicted protein | 330 | 2e-028 |
| Q01ML2 H0613H07.1 protein | 330 | 2e-028 |
| B7ZX41 Putative uncharacterized protein | 324 | 8e-028 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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