Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN12367

FASTA Sequence
Unigene ID: UN12367Length: 1453 SSR 
GGAAAACCCATCATTCCTTCTTCTGCTTCTCCATCCTCTCTCTCTCTCTCATGGTACATTAGATTCCAAATATATACGATCAAGCA
TTCTCGTCTGCTTAGCTTACAATTCCGAAATGGATATTCATTAACACTATTACCTGAAAATCTCAAGAGAGAATAAAAAAAGTTGG
AAGCTTTTGATTTCATCCATCCATCCATCTTCTGCTTTTTTTTCTTTTTTTTTCTGGTGAACTGTTTGTTTGTTGTGGTGGGGTTT
TCTAAAATTACTTTGAAATTTTCTGATCTAATGGCTGATGTTGATTCTGTTCACGACCTTGTCACTGACGGAATTGAGAAGAGCCT
GGTGACCGATTCTAAACCGGAATCGGAATCGGAATCGGACCTCAAACCCAAATCTAAACCGGAATCGGACGTTGGTCAGATGAAGA
AGCTTGCGCTGAATCCTGAAGCTAAAGAGTTCTTTCCTTCTTACAAGAAGAAGTACGATCAGTCTCTGTCTTCTGAAGATTTTGCG
ACCGCTAAGAAGCTGTCTGGTGAAGATCTTAAAGCCGACAACAAAAAGGATGGCAATTTCCGGAGGAGCAGAAACAATTATAACCA
AGGGAGGAAAGCGAGAGTAACTGGAAGAGCTTCAAAGGCTCAAAGAGAGGATAGTATTAGAAGAACTGTATATGTCTCTGACATTG
ATCAAAGTGTGACTGAGAAGTCTTAGCTGGTTTGTCAGCAGCTATGGACAAGTTGTTGATTGTCGTATCTGTGGAGATCCACATTC
AGTTCTTCGCTTTGCCTTTGTTGAGTTCTCTGATGACCATGGTGCAAGGGCTGCTTTAAGTGTAGGTGGAACAATGATCGGTTATT
ACCCAGTTAGGGTCTTACCTTCTAAAACTGCTATTCTTCCTGTGAATCCCACATTTCTCCCCAGGTCAGAAGATGAGAGGGAGATG
TGTAGCAGAACCATCTACTGCACTAATGTTGACAAGAATGCCACTGAAGATGATGTCAAAATCTTCTTTGAGTCTGCCTGCGGTGA
GGTAACTCGCATAAGGCTTCTTGGTGACCAGTTGCATTCTACTCGTATAGCTTTTGTTGAATTTGCCATGGCGGAGAGTGCAGTTG
GGGCGCTCAACTGCAGTGGAGTAGTCTTAGGATCGCAGCCGATAAGGGTAAGCCCTTCAAAGACACCAGTGAGACCAAGATTCAGT
CGATCACCATCCTCAAACTAGGGAGAGAAAAAGAACCAACCCCAAGAGGCTTTGTTGGTGCTGGAGAGTGATGATCAACATTTCGT
TGAGTAATTTTTCTTTTCGGTTATCTTTTTAATTGTTCTCTAATCTCTAGAGCAGAGTTATATCTCCAGTTCTATAGTATCTGGGA
ACAAATGCAACGATGAACATGCTTTCTGAGTTCTTGTTCTGAGACTCATTTCAGTTTATAACATTTTTCTCAAATGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAD43546 putative RNA-binding protein [Arabidopsis thaliana]7872e-081
NP_175769 CTC-interacting domain 8 protein [Arabidopsis thaliana]7872e-081
NP_001031182 CTC-interacting domain 8 protein [Arabidopsis thaliana]7872e-081
NP_188063 CTC-interacting domain 9 protein [Arabidopsis thaliana]7433e-076
XP_002277842 PREDICTED: hypothetical protein [Vitis vinifera]7254e-074

Swiss-Prot top hits (Blast detail)Scoree value
Q9JKL7 Splicing factor, arginine/serine-rich 121481e-008
Q8BZX4 Splicing factor, arginine/serine-rich 121444e-008
Q8WXA9 Splicing factor, arginine/serine-rich 121426e-008

TrEMBL top hits (Blast detail)Scoree value
Q67ZZ8 Putative RNA-binding protein (Fragment)7872e-081
Q9C8M0 At1g536507872e-081
Q9LRR6 Similarity to RNA-binding protein7432e-076
B9GGV8 Predicted protein7217e-074
C6TDF4 Putative uncharacterized protein7182e-073

Arabidopsis top hits (Blast detail)Scoree value
AT1G53650.1 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding7887e-084
AT1G53650.2 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding7887e-084
AT3G14450.1 CID9 (CTC-Interacting Domain 9); RNA binding / protein binding7448e-079
AT1G32790.1 RNA-binding protein, putative6937e-073
AT4G10610.1 CID12; RNA binding6669e-070

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  50%
 
82  50%

Unigene MembersMember information