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Information for unigene UN12367
| FASTA Sequence |
| Unigene ID: UN12367 | Length: 1453 |
SSR | | GGAAAACCCATCATTCCTTCTTCTGCTTCTCCATCCTCTCTCTCTCTCTCATGGTACATTAGATTCCAAATATATACGATCAAGCA
TTCTCGTCTGCTTAGCTTACAATTCCGAAATGGATATTCATTAACACTATTACCTGAAAATCTCAAGAGAGAATAAAAAAAGTTGG
AAGCTTTTGATTTCATCCATCCATCCATCTTCTGCTTTTTTTTCTTTTTTTTTCTGGTGAACTGTTTGTTTGTTGTGGTGGGGTTT
TCTAAAATTACTTTGAAATTTTCTGATCTAATGGCTGATGTTGATTCTGTTCACGACCTTGTCACTGACGGAATTGAGAAGAGCCT
GGTGACCGATTCTAAACCGGAATCGGAATCGGAATCGGACCTCAAACCCAAATCTAAACCGGAATCGGACGTTGGTCAGATGAAGA
AGCTTGCGCTGAATCCTGAAGCTAAAGAGTTCTTTCCTTCTTACAAGAAGAAGTACGATCAGTCTCTGTCTTCTGAAGATTTTGCG
ACCGCTAAGAAGCTGTCTGGTGAAGATCTTAAAGCCGACAACAAAAAGGATGGCAATTTCCGGAGGAGCAGAAACAATTATAACCA
AGGGAGGAAAGCGAGAGTAACTGGAAGAGCTTCAAAGGCTCAAAGAGAGGATAGTATTAGAAGAACTGTATATGTCTCTGACATTG
ATCAAAGTGTGACTGAGAAGTCTTAGCTGGTTTGTCAGCAGCTATGGACAAGTTGTTGATTGTCGTATCTGTGGAGATCCACATTC
AGTTCTTCGCTTTGCCTTTGTTGAGTTCTCTGATGACCATGGTGCAAGGGCTGCTTTAAGTGTAGGTGGAACAATGATCGGTTATT
ACCCAGTTAGGGTCTTACCTTCTAAAACTGCTATTCTTCCTGTGAATCCCACATTTCTCCCCAGGTCAGAAGATGAGAGGGAGATG
TGTAGCAGAACCATCTACTGCACTAATGTTGACAAGAATGCCACTGAAGATGATGTCAAAATCTTCTTTGAGTCTGCCTGCGGTGA
GGTAACTCGCATAAGGCTTCTTGGTGACCAGTTGCATTCTACTCGTATAGCTTTTGTTGAATTTGCCATGGCGGAGAGTGCAGTTG
GGGCGCTCAACTGCAGTGGAGTAGTCTTAGGATCGCAGCCGATAAGGGTAAGCCCTTCAAAGACACCAGTGAGACCAAGATTCAGT
CGATCACCATCCTCAAACTAGGGAGAGAAAAAGAACCAACCCCAAGAGGCTTTGTTGGTGCTGGAGAGTGATGATCAACATTTCGT
TGAGTAATTTTTCTTTTCGGTTATCTTTTTAATTGTTCTCTAATCTCTAGAGCAGAGTTATATCTCCAGTTCTATAGTATCTGGGA
ACAAATGCAACGATGAACATGCTTTCTGAGTTCTTGTTCTGAGACTCATTTCAGTTTATAACATTTTTCTCAAATGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAD43546 putative RNA-binding protein [Arabidopsis thaliana] | 787 | 2e-081 |
| NP_175769 CTC-interacting domain 8 protein [Arabidopsis thaliana] | 787 | 2e-081 |
| NP_001031182 CTC-interacting domain 8 protein [Arabidopsis thaliana] | 787 | 2e-081 |
| NP_188063 CTC-interacting domain 9 protein [Arabidopsis thaliana] | 743 | 3e-076 |
| XP_002277842 PREDICTED: hypothetical protein [Vitis vinifera] | 725 | 4e-074 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9JKL7 Splicing factor, arginine/serine-rich 12 | 148 | 1e-008 |
| Q8BZX4 Splicing factor, arginine/serine-rich 12 | 144 | 4e-008 |
| Q8WXA9 Splicing factor, arginine/serine-rich 12 | 142 | 6e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q67ZZ8 Putative RNA-binding protein (Fragment) | 787 | 2e-081 |
| Q9C8M0 At1g53650 | 787 | 2e-081 |
| Q9LRR6 Similarity to RNA-binding protein | 743 | 2e-076 |
| B9GGV8 Predicted protein | 721 | 7e-074 |
| C6TDF4 Putative uncharacterized protein | 718 | 2e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G53650.1 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding | 788 | 7e-084 |
| AT1G53650.2 CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding | 788 | 7e-084 |
| AT3G14450.1 CID9 (CTC-Interacting Domain 9); RNA binding / protein binding | 744 | 8e-079 |
| AT1G32790.1 RNA-binding protein, putative | 693 | 7e-073 |
| AT4G10610.1 CID12; RNA binding | 666 | 9e-070 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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