RadishBase

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Information for unigene UN12396

FASTA Sequence

Unigene ID:UN12396

Length: 982

AATAATGTTTGTTTTTCTAAACCAAAGCCGAACTTGTCTAGATAATACAAATACCATTACAACACTGGTTTGTGGAACTATTCCAC
AGTCTATCTTGTGTTGTAACTCAAGAAAACTAATGCAAAAGACACTTTTGAGTTCTCTCATAAGAAAGCACAAGTCCTCCTAGATA
TAAACAATACAACAAAAGCATTCTTTGGATCATTTCATTTGCTATCATCTTTTCCTTGTCCCTCTGCTCCATCTTGCTTTCCCCCT
CTAAGCCCCACGTTTGCAGCGGTTCCTCCGAGAGAGGTTTCTGGCGGTTGTTGCATCTGATGCTGCATCCCGTTGTTGTTGTTGTT
GTTGATACCCATTGGTCTCATCCCCATGTGTCCATGCATAGCTTGTTGATGCATATGCTGCTGCTGTTGCGGATCCTGGAGCTGGT
GTGGGCTACCAAACTGCAAAGGACCTCTTGGAGGGAAGATGCCACCGGGTGGTGCTTGTTGAGCCATCCCTGAAGCTTGTGGGTGC
TGTTGCATAAAGTAGCTCGGCGGTTGCATCGCAGGATGATGCGGTGGTGCCGCCATCTGGGAAGCCATAGCTGGTGGTGGTGTAGC
TCCAGCAGTAGATGGAGGAGGCTGAGCATCAGCAATAGCAGCGAGGTACATTAAGTTCTTCTGGAGAAGAGCTTGGTACTGTGCAC
ACTCTGCAAGTTTTCCAAGATTCTGATTTTCCATGATTGCCATTATCAGCTTCTTGTTCTCCTCAAGGTACTTTTGGATCTGTTCG
GGTGGTGATGTTAGTTGGCGGCATCGAAGGAACCATCGGAAACATTTGCGGAGACTGCTGCTGCTGCATCTTCCTTTACTTGTCCA
ATAAAACCAAAACCCTCGAGATTCTACCAAACCCAGAACGATCAAGTCTCCAGCAAATATTATTATAAAGATTATCCCTTCACTTG
GATTCCTCTAGAGAGAGAAGGTCTCCTCCGATTTCC

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
XP_002892085 hypothetical protein ARALYDRAFT_887341 [Arabidopsis lyrata subsp. lyrata]	683	1e-069
XP_002875011 grf1-interacting factor 3 [Arabidopsis lyrata subsp. lyrata]	593	4e-059
AAB62864 contains region of similarity to SYT [Arabidopsis thaliana]	583	6e-058
NP_567194 GRF1-interacting factor 3 [Arabidopsis thaliana]	582	8e-058
ACU23486 unknown [Glycine max]	442	1e-041

Swiss-Prot top hits (Blast detail)	Score	E value
Q9UHA2 SS18-like protein 2	147	9e-009
Q9D174 SS18-like protein 2	143	3e-008
Q86HX9 Myb-like protein K	124	4e-006

TrEMBL top hits (Blast detail)	Score	E value
Q9MAL9 At1g01160/F6F3_1	668	6e-068
O23091 AT4g00850 protein	583	4e-058
Q93VH6 AT4g00850/A_TM018A10_22	582	5e-058
C6TKP6 Putative uncharacterized protein	442	9e-042
B9SVF1 Synovial sarcoma associated ss18 protein, putative	428	4e-040

Arabidopsis top hits (Blast detail)	Score	E value
AT1G01160.1 SSXT protein-related / transcription co-activator-related	697	1e-073
AT1G01160.2 SSXT protein-related / transcription co-activator-related	673	9e-071
AT4G00850.1 GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator	582	3e-060
AT5G28640.1 AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator	191	7e-015

EST library breakdown for ESTs in the assembly


11	2			40%


8	1			20%


12	2			40%

Unigene Members