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Information for unigene UN12396

FASTA Sequence
Unigene ID: UN12396Length: 982 SSR 
AATAATGTTTGTTTTTCTAAACCAAAGCCGAACTTGTCTAGATAATACAAATACCATTACAACACTGGTTTGTGGAACTATTCCAC
AGTCTATCTTGTGTTGTAACTCAAGAAAACTAATGCAAAAGACACTTTTGAGTTCTCTCATAAGAAAGCACAAGTCCTCCTAGATA
TAAACAATACAACAAAAGCATTCTTTGGATCATTTCATTTGCTATCATCTTTTCCTTGTCCCTCTGCTCCATCTTGCTTTCCCCCT
CTAAGCCCCACGTTTGCAGCGGTTCCTCCGAGAGAGGTTTCTGGCGGTTGTTGCATCTGATGCTGCATCCCGTTGTTGTTGTTGTT
GTTGATACCCATTGGTCTCATCCCCATGTGTCCATGCATAGCTTGTTGATGCATATGCTGCTGCTGTTGCGGATCCTGGAGCTGGT
GTGGGCTACCAAACTGCAAAGGACCTCTTGGAGGGAAGATGCCACCGGGTGGTGCTTGTTGAGCCATCCCTGAAGCTTGTGGGTGC
TGTTGCATAAAGTAGCTCGGCGGTTGCATCGCAGGATGATGCGGTGGTGCCGCCATCTGGGAAGCCATAGCTGGTGGTGGTGTAGC
TCCAGCAGTAGATGGAGGAGGCTGAGCATCAGCAATAGCAGCGAGGTACATTAAGTTCTTCTGGAGAAGAGCTTGGTACTGTGCAC
ACTCTGCAAGTTTTCCAAGATTCTGATTTTCCATGATTGCCATTATCAGCTTCTTGTTCTCCTCAAGGTACTTTTGGATCTGTTCG
GGTGGTGATGTTAGTTGGCGGCATCGAAGGAACCATCGGAAACATTTGCGGAGACTGCTGCTGCTGCATCTTCCTTTACTTGTCCA
ATAAAACCAAAACCCTCGAGATTCTACCAAACCCAGAACGATCAAGTCTCCAGCAAATATTATTATAAAGATTATCCCTTCACTTG
GATTCCTCTAGAGAGAGAAGGTCTCCTCCGATTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892085 hypothetical protein ARALYDRAFT_887341 [Arabidopsis lyrata subsp. lyrata]6831e-069
XP_002875011 grf1-interacting factor 3 [Arabidopsis lyrata subsp. lyrata]5934e-059
AAB62864 contains region of similarity to SYT [Arabidopsis thaliana]5836e-058
NP_567194 GRF1-interacting factor 3 [Arabidopsis thaliana]5828e-058
ACU23486 unknown [Glycine max]4421e-041

Swiss-Prot top hits (Blast detail)Scoree value
Q9UHA2 SS18-like protein 21479e-009
Q9D174 SS18-like protein 21433e-008
Q86HX9 Myb-like protein K1244e-006

TrEMBL top hits (Blast detail)Scoree value
Q9MAL9 At1g01160/F6F3_16686e-068
O23091 AT4g00850 protein5834e-058
Q93VH6 AT4g00850/A_TM018A10_225825e-058
C6TKP6 Putative uncharacterized protein4429e-042
B9SVF1 Synovial sarcoma associated ss18 protein, putative4284e-040

Arabidopsis top hits (Blast detail)Scoree value
AT1G01160.1 SSXT protein-related / transcription co-activator-related6971e-073
AT1G01160.2 SSXT protein-related / transcription co-activator-related6739e-071
AT4G00850.1 GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator5823e-060
AT5G28640.1 AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator1917e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  40%
 
81  20%
 
122  40%

Unigene MembersMember information