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Information for unigene UN12433

FASTA Sequence
Unigene ID: UN12433Length: 859 SSR 
GACGCTCTCTCTCTCTCTCGATTTGGATCAGAAAATTTCTTCGATCATCAAAATGGCGACCGCTTCAGACTCTCCGACACAGACGA
TTCAGGAAGCGATTCATCAAGAAGATGTGGTTAACGAAACTAAGGGGGAAGAGGAGGTCACGTACAAGACGAAATCGATTCAGTTC
CTTGGACGAAACACGCCCATCATTCTCCAGAACGAGAATGGACCTTGCCCTCTTTTAGCCATCTGTAATGTTCTTCTCTTGAGAAA
CAACTTGAAGCTTAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCTCTTGTGGTGGACAGATTGATTGATTCCAATA
GTAAAGTCAATGACAAAGAAGAAGAATATATCAAGAATCAGCAACAGAACATTGCTGATGCTATTGATCTTCTTCCGCGTCTTACA
ACTGGAATTTGATGTCAATATTAAATTCAGGAGGATTGATGATTTTGAGTTCACACCTGAGTGTGCAATATTTGACTTACTTGACA
TTCCCTTATATCATGGATGGATAGTTGATCCCCAGGATGTTGAAGCAGCTAATGCACTTGGTAGCAAGTCATATAATACTCTAATG
GGGGGAGCTCGTTGCACTGGAAACGCAGAATGTAGAGGATGAAAATGCCGGAGAGGATTCTTTGATTTCGTTGCGGCAACCACAGC
GGCTCTAGGTGTTCCTTCGCCATGTCTCTCGAGAACGAGTTCTTTTCAAGATTCTCCACCTGCAGCTATAGAGCTTCGTAAACTGA
GAAAAGGAGATCTTGAAGAGAAACAGAGTTATTGCAGCCTTGCAATTATCACAGGGAAACGATCCAGCACAAACACTCACGGAGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAB44324 putative protein [Arabidopsis thaliana]5396e-053
NP_567383 uncharacterized protein [Arabidopsis thaliana]5396e-053
XP_002874729 hypothetical protein ARALYDRAFT_490003 [Arabidopsis lyrata subsp. lyrata]5136e-050
XP_002299570 predicted protein [Populus trichocarpa]4097e-038
XP_002509683 conserved hypothetical protein [Ricinus communis]4043e-037

Swiss-Prot top hits (Blast detail)Scoree value
A3KQS4 Protein FAM63A2078e-016
Q76LS9 Protein FAM63A2061e-015
Q2KJ22 Protein FAM63A2051e-015
Q8N5J2 Protein FAM63A2042e-015
Q5BJQ2 Protein FAM63A2042e-015

TrEMBL top hits (Blast detail)Scoree value
Q8LE63 Putative uncharacterized protein5394e-053
Q9T054 Putative uncharacterized protein AT4g118605394e-053
B9GKQ9 Predicted protein4095e-038
B9RBZ9 Putative uncharacterized protein4042e-037
B9GW47 Predicted protein3971e-036

Arabidopsis top hits (Blast detail)Scoree value
AT4G11860.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22960.1); Has 761 Blast hits to 466 proteins in 133 species: Archae - 0; Bacteria - 44; Metazoa - 311; Fungi - 246; Plants - 57; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).5392e-055
AT4G22960.1 unknown protein1826e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  50%
 
121  50%

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