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Information for unigene UN12466

FASTA Sequence
Unigene ID: UN12466Length: 1532 SSR 
AATCTGTCTTCGACTTTCATCTTCGATCCCTCTCTCTCTCTCTCCCCGTTACCTTTTGCTTCTCAGATCTTGGGTTGACCGTACCG
ATCGTTGACCTTCCTGAATCGGAATCTGGGCTCGGCTTTAAAAAAATCCAACCTTTCTCCTTCGGGGAGTTCGAGACTAACAATTT
ATATAAGAAAGGTCGAGTCTTTGGTTCTGGGTTATGATGAACTAGTATGGAACTGATCGTCGTCACACGAAAACAAGAATAATAAG
AAAATCAATAAAGAGAGATGACGCTTTACATTCGTCGCGAATCTTCCAAGCTGTGGAAGAGATTTTGCTCGGAGATAACGACGGAG
ATCGGTCTCCTCGCTGAGAACTGGAAGTACCTTGTCGCTGGTATTATCTGTCAGTACATTCATGGTTTGGCTGCTAAAGGAGTTCA
TTATATTCATCGCCCTGGACCGACTCTCCAGGATCTTGGCTTCTTTCTTCTTCCGGAGCTTGGTCAAGAGAGAAGCTACATAAGTG
AGACTGTGTTCACTACTGTATTTGTTTCCTTTTTCCTGTGGACTTTCCATCCATTCATCCTGAAAAGCAAAAAGATATACACCGTC
TTGATATGGTGCAGAGTTCTAGCATTCTTGGTTGCCTGTCAGTTTCTCCGTGTTATAACATTCTATTCAACTCAGCTTCCTGGCCC
AAACTATCACTGTCGTGAGGGCTCTAAAGTTGCCAGGATGCCATGGCCCAAAAACCCTCTTGAGGTTCTCGAGATTAACCCTCATG
GGGTGATGTACGGATGTGGAGACTTGATCTTCTCATCGCATATGATCTTCACGCTAGTCTTTGTCCTCACTTACCAGAAGTACGGC
ACCAAAAGGTTCATAAAGCTGTTTGGTTGGCTCACTGCTTTCGTGCAGAGCCTCTTGATCATTGCCTCCCGTAAACATTACACTGT
CGATGTCGTTGTTGCATGGTATACTGTGAATCTGGTGGTGTTCTGTCTAGACAAGAAACTGCCAGAACTACCAGACCGGACTACGG
TGTTGCTCCCAGTAATCTCAAAAACGAAAGAAGAGAACCACAAGCTGTTGTTGAATGGGAACGGTGTTGATCCTGCTGACTGGAGA
CCAAGGGCTCAAGTGAATGGCAAGATAGATAGCAACGGAGTTCACACTGATAACTCAATCAATGGCGCATGAAACTCACCACACCA
GACCTTTGGGACACAAATATGTATATGAAAACAGATAATCAATGGCTGTCATGAAGAGTCTTGAATTATTCTGTAAGGGTGGTAAA
GTTTTGTTTTTTTTTGGTCATTGTTCCAGAAAGGAAGAACAATTCATAGAGAGAAGTGCTATTTTGTATATTTTCCAGCTACTTGA
TCCCCAAGTAATCATCTTTTTGTTGGATCTCTGTTTTTTGTTTTCATTTTATGTCAATTTTGTTATTAGAAACTGTGTGTTATCTT
TGAGACGTTGTTATGCATTGCGCATTTGTTTTGAATTTGGAATATTAAAAAGAAAAAACTCTTTACGTTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002879716 hypothetical protein ARALYDRAFT_482800 [Arabidopsis lyrata subsp. lyrata]15373e-168
NP_565875 inositol phosphorylceramide synthase 2 [Arabidopsis thaliana]15346e-168
XP_002876236 hypothetical protein ARALYDRAFT_906800 [Arabidopsis lyrata subsp. lyrata]13733e-149
NP_190970 inositol phosphorylceramide synthase 1 [Arabidopsis thaliana]13724e-149
AAK82549 AT3g54020/F5K20_320 [Arabidopsis thaliana]12748e-138

Swiss-Prot top hits (Blast detail)Scoree value
Q8VCQ6 Phosphatidylcholine:ceramide cholinephosphotransferase 11427e-008
Q7TSX5 Phosphatidylcholine:ceramide cholinephosphotransferase 11427e-008
Q7T3T4 Phosphatidylcholine:ceramide cholinephosphotransferase 11372e-007
Q86VZ5 Phosphatidylcholine:ceramide cholinephosphotransferase 11354e-007
A0AAS4 Phosphatidylcholine:ceramide cholinephosphotransferase 11354e-007

TrEMBL top hits (Blast detail)Scoree value
Q9SH93 At2g37940/T8P21.1515344e-168
Q9M325 At3g54020/F5K20_32013723e-149
Q94AC2 AT3g54020/F5K20_32012746e-138
B9DHT1 AT2G37940 protein (Fragment)12021e-129
B9IG09 Predicted protein11133e-119

Arabidopsis top hits (Blast detail)Scoree value
AT2G37940.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G54020.1); Has 316 Blast hits to 316 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).15352e-170
AT3G54020.1 phosphatidic acid phosphatase-related / PAP2-related13731e-151
AT2G29525.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G54020.1); Has 352 Blast hits to 352 proteins in 78 species: Archae - 0; Bacteria - 4; Metazoa - 245; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).9885e-107
AT2G29525.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G54020.1); Has 352 Blast hits to 352 proteins in 78 species: Archae - 0; Bacteria - 4; Metazoa - 245; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).9473e-102

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
123  50%
 
71  17%
 
181  17%
 
111  17%

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