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Information for unigene UN12483
| FASTA Sequence |
| Unigene ID: UN12483 | Length: 776 |
SSR | | AGTGGAGACTTGTGTCCTTGCGGTGTTAAGCTTCTTTGTCCTTTAGGTTCTTGCCTTTTTTTCCGATCAATCAGACCAATCTCTCA
CCTTTTTGGCATCTTCGTGTTTCTTATATTTCTCTGTTGGGATTCTTCAAATCAATTCCTCGTTGCATCAGAGAAAGATGTATAAT
CAGTTAGCTATATCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTACTATGAATCTTTGAAGATTTTGGAAGCTGATGTCCAACACGC
AAATACTTTGGCAGAGGCAATTCCAATGGGGAAGAACAATGTGCGGCTTCAGATGAAACTGGTTCATACCAACTTTGCTTCATTAT
TACTCTTCTTGCTTCGGTGGATGGATCTTTCTTGCTCATGTCTGCTTCCTCGCTACTTTAACCTCTTTCATGTTCTTGTCTACAAG
GTTCATTCTGATGGGCAACCGAAGCTCACCACTCACGGGAGGAAAGCTACTGTCAGTGAGTTCTATGGTGTGATACTACCATCACT
TCAGCTATTACACAGCAACTTAGACGAGCTGGCAAACGCAGACCTGGGGTTTGACCTTAAAAGACTCAGCAAGAAGATAACAAAAG
AGGCTCGCAGCAGTAGATTCAGCAGTGCCGGGTTTGACCGCGAGGAAGAATGTGGAATCTGTTTAGAAACTTGCACCAAAATGGTT
TTGCCAAATTGCTGCCACTCAATGTGCATCAAATGCTACCGCAACTGGAACTTGAAGTCACAGTCATGCCCGTTTTGCCGGGGGAG
CA
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002892732 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 994 | 9e-106 |
| NP_563922 RING/U-box domain-containing protein [Arabidopsis thaliana] | 972 | 3e-103 |
| NP_001117278 RING/U-box domain-containing protein [Arabidopsis thaliana] | 820 | 1e-085 |
| XP_002515021 ubiquitin-protein ligase, putative [Ricinus communis] | 665 | 1e-067 |
| XP_002311740 predicted protein [Populus trichocarpa] | 654 | 2e-066 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q9SAF3 At1g13195 | 972 | 2e-103 |
| B3H455 Uncharacterized protein At1g13195.2 | 820 | 9e-086 |
| B9RMQ2 Ubiquitin-protein ligase, putative | 665 | 8e-068 |
| B9HLC0 Predicted protein | 654 | 2e-066 |
| B9HTE6 Predicted protein | 629 | 1e-063 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G13195.1 zinc finger (C3HC4-type RING finger) family protein | 984 | 5e-107 |
| AT1G13195.2 zinc finger (C3HC4-type RING finger) family protein | 820 | 6e-088 |
| AT1G24440.1 protein binding / zinc ion binding | 625 | 2e-065 |
| AT5G58787.1 zinc finger (C3HC4-type RING finger) family protein | 424 | 5e-042 |
| AT3G47160.1 protein binding / zinc ion binding | 408 | 3e-040 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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