RadishBase

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Information for unigene UN12607

FASTA Sequence

Unigene ID: UN12607	Length: 1084	SSR
GACTGCTCCTACTACTACTACTACTCAGCAGCGAGAATCTCAAGCTGCTTCCTCTTCTAGCATCTTGCAAAAAGCTAGTGCTGCAT TAGAAGTTTTGAAGGAAGTGCTTGACGCAGTTGATTCTCATAATCCTGAGGGAGCAAAAGATGAGTTTACTCTTGATCTTGTAGAG CAATGCTCATTTCAGAAAGAGCGTGTAATGCACCTCGTCATGACATCTAGGGATGAAAGAGCAGTTTCTCAAGCAATTGAATTGAA TGAACAACTTCAGAGAATTCTTAATAGACATGAAGACTTACTCTCTGGTAGATTCACAGGGCCAGGAAGGTCTGCTGCTGCATCCA ATGGTTATCGTTCCAATAATCTCGAACCTAGTCGTCCTACCTCAAACGGTTCTAATGCAAATACCAAATCGAACAGCTCTATCTCT AATCCAAACCATCTTAATCTTGAAGATGAGGAGGAGGAAGAGGAGCCTGAGCAGTTATTCAGAAGATTGCGAAAAGGGAAAGCTAG AGCAATGCCTGAAGATGAAGAAAAGCCATCACCTCCACAAGCCTTACTTGGATCGGCAATCCATAATGAAAGACTCAACCGTCCAC TCATTCGTCCTTTACCATCAGAGGCATCATCACGCAGTGGTGGTGATAGCCATAGCCATAGCCATTCACAGTCCCCGCCTGTTGTG ATTCCACCACCACCTTCAAAACACGTTGAGAGGGAAAAGTTCTTCAAGGAGAAGAAAGTTGATGGTGCCTCCTCGGGTTTACCATG CCACATGAGAGGCCTTTCTTTGCATAGCCGTGATGGCAGCAGCTCACGCAGTGGAAGTGTATACTTCAGTGACTGAAACACACCCC AAAACTTCTGGCTCCATCATCATACATATATGTATTCTTCTTTTTACTCTTGCTATTTTTAGGCTTTGTTATTTTACAGAAAAGTG TGTTATGTGTGTGTGGATGTTCCTCTGTATCTCCTAGTGTTGTGAAATTAGAATATAGCATGTATACTTCGTTTCACTATGTTGAA ACATGAGCTATGCTATTTTATAGAGGTGTGTTGTTCCTGTTTGTGTAGTGAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ34493 unnamed protein product [Thellungiella halophila]	1120	4e-120
XP_002864859 VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata]	1106	2e-118
NP_201169 ENTH/VHS/GAT family protein [Arabidopsis thaliana]	1089	1e-116
XP_002325737 predicted protein [Populus trichocarpa]	379	3e-034
CBI21665 unnamed protein product [Vitis vinifera]	357	1e-031

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q9FFQ0 Gb\|AAF26070.1	1089	1e-116
B9IP43 Predicted protein	379	2e-034
B9N5B3 Predicted protein	348	8e-031
B9RHN5 Hepatocyte growth factor-regulated tyrosine kinase substrate, putative	346	1e-030
Q6ZC73 Os08g0109000 protein	310	2e-026

Arabidopsis top hits (Blast detail)	Score	e value
AT5G63640.1 VHS domain-containing protein / GAT domain-containing protein	1090	4e-119
AT1G21380.1 VHS domain-containing protein / GAT domain-containing protein	196	2e-015
AT1G76970.1 VHS domain-containing protein / GAT domain-containing protein	187	2e-014
AT4G32760.1 protein transporter	181	1e-013
AT2G38410.1 VHS domain-containing protein / GAT domain-containing protein	171	2e-012

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			33%


6	2			67%

Unigene Members	Member information