 |
Information for unigene UN12696
| FASTA Sequence |
| Unigene ID: UN12696 | Length: 801 |
SSR | | GGGAACAAAAAAGAGAAAAAAGAGTTTATCCCACTGGCCACAGTTAGGCCACAGAGTCTATGCGGAGAGAAAGGAAAGCACATCAT
CATCATCATCATCTTCACGACAAAAGTTGATTGATTCTCTATGGCTTCATCGATCGTTTTCGCTGCAACTCCAGCTACTGCTGGGT
TCCTCTCCTCTGTTCCTCCTTGGAAGGCGCCTAGGAGATTTCATGTTAGGTCTTCACTTGACGCAGACGTTTCCGACATGAGTGTT
AACGCTCCAAAGGGGCTGTTTCCTCCAGAGCCTGTACCTTACAAGGGACCGAAGCTGAAAGTAGCTATCATAGGAGCTGGACTTGC
TGGCATGTCAACTGCTGTTGAGCTTCTCGATCAGGGTCACGAGGTGGATATATATGATTCGAGGACTTTCATTGGTGGCAAAGTTG
GCTCGTTTGTCGATAGACGAGGGAACCACATCGAAATGGGTTTACATGTCTTCTTCGGATGCTATAACAATCTCTTCCGCTTGATG
AAAAAGGTTGGAGCTGATAAGAACCTTCTTGTCAAAGACCACACTCATACATTTATAAACAAAGGCAGCGAAATTGGAGAGCTTGA
TTTTCGGTTTCCTGTTGGAGCTCCAATTCACGGTATCCGCGCCTTTTTAGTAACAAATCAACTCAAGCCGTATGACAAGCTGAGGA
ACTCACTAGCTCTTGCATTGAGCCCTGTCGTTAAAGCTCTCGTTAACCCCGATGGAGCAATGCAAGACATTCGCAACCTAGACAGC
ATAAGTTTCTCTGATTGGTTCCTCTCT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACM68701 zeta-carotene desaturase [Brassica rapa subsp. pekinensis] | 1133 | 7e-122 |
| XP_002882378 zeta-carotene desaturase precursor [Arabidopsis lyrata subsp. lyrata] | 1029 | 8e-110 |
| AAM63349 putative zeta-carotene desaturase precursor [Arabidopsis thaliana] | 1014 | 4e-108 |
| AAF85796 zeta-carotene desaturase precursor [Arabidopsis thaliana] | 1007 | 3e-107 |
| NP_187138 zeta-carotene desaturase [Arabidopsis thaliana] | 1007 | 3e-107 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q38893 Zeta-carotene desaturase, chloroplastic/chromoplastic | 1007 | 1e-108 |
| O49901 Zeta-carotene desaturase, chloroplastic/chromoplastic | 916 | 5e-098 |
| Q9FV46 Zeta-carotene desaturase, chloroplastic/chromoplastic | 891 | 4e-095 |
| Q9SMJ3 Zeta-carotene desaturase, chloroplastic/chromoplastic | 888 | 8e-095 |
| Q9SE20 Zeta-carotene desaturase, chloroplastic/chromoplastic | 888 | 8e-095 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9VUW3 Zeta-carotene desaturase | 1133 | 5e-122 |
| Q8LD88 Putative zeta-carotene desaturase | 1014 | 3e-108 |
| Q93Y81 Zeta-carotene desaturase | 952 | 5e-101 |
| B3VSF5 Zeta carotene desaturase | 950 | 8e-101 |
| Q8VXN4 Zeta-carotene desaturase | 950 | 8e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G04870.1 ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase | 1007 | 1e-109 |
| AT3G04870.2 ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase | 1007 | 1e-109 |
| AT4G14210.1 PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase | 240 | 1e-020 |
| AT4G14210.2 PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase | 240 | 1e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
