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Information for unigene UN12728
| FASTA Sequence |
| Unigene ID: UN12728 | Length: 1441 |
SSR | | ATTTCAAAACAAAAAATGTTATTTGGTCATTTTATTCTTTTAGTGTTATTTTTTGTGACAAAAAATAAAAAAGTGCTATTTTAGAG
ATTTGCCGAAAATATAACCATTGTTGATACATTTGACTGTTTAAAAGAAAAATAACGGTTGACAAGAAAAAGAGAGTAATGACTGT
AAAAGTTTGTATCATTCCTTTTGTATGGCTCAGGAGAATGAAGAGAAGAACTCTGCCCCTCATCATAATCTTTTTCACCTTCTTCT
TGATAGAAGTATGCCAGTAACTATAGCTGTTCCTGTTACTGCAATCGCCACTGATGATACTATCCTCTTCACTGTAAACACTGAGT
CGTCGCTCGGTATCTCCATTAGATCTTTCATCGTTATAGGTTGCTTCCAGTTCTTCTTGATTCCATTAATATGCCCTCTGCCGACA
ACTGCAACGACCGAGTTGTGCTCACTTGCAACTCTCAGCAAAGAGGATGCCATGTACTGGTCTCGCTCATGTACAAGAGTCTCCAT
GAGAGATGGAAACTCCTTGCTCATTTCTTGAATCACCAGAGTCACCATATCCACATTGTCCATTTCTTTCAGCATTCTGTCGAGTT
CTTCAGCGCTCGGCAAGAAGACAGCTTGAAACATCAAGGAGTAAAGAAACTTTACCTTGTGCCATAGAGGCATCTTTGCCCATGTT
CTTTTTAACGTGATCTGTACAGGACGATCCCCAAGTATCACACCGCCTCCATATTTAAGGGCCTCTTCATATGCCACACGAAACTC
AGTACCAGGAAAAACCTCCAGCTGACTTGCGATCTTTGCAAGAAACCAGCCATAGAGTATTCCAAACGTGTTCTGTTTCTGCTTCC
AACTTTCAATCATGTCCCACATGGTTGGAATCTTCATAGTCTGGGGTTGGAGAATAGACACTCGGCTTGCACACAGCTCCACGAAG
ACAGCCTCTGGTTTCAAGAAGCTGATTATTTCTTTAACTTCGCGACAGGATTCCTTCGATACATGAGCAGTCCCGATCAAATACAC
ATCGCATGTTCCGCTTTCCCCAGTCGACTCGCACGTCAGGATCACTACGCTTTTCGCCAGTTCCTCCGGCAGCTCCACTTTCTCCG
ACGATGAACACTCGCCACCGCCGTCACCACCGGCTGCATCTCCGACGCTAGCAACGGAATCGGAGTCTCTCTGTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTCAACCGCGTCCTCCTTCTCCACATTCACTATGCTGTCGCTTAGAGTGAAATCGCCGGCAGGCTTGGAGTG
TTCTTCGATGTGAACGAAGTCCTCGCCGGAGTGAACCTCCGTTTCCGACGGCGATTGCGTCGGTTCCATCGAATCGAGGAGGAGGA
GGTTGGATGGCAGAGATGTAATTTCGAGGGATTGCCGATGGCGAAAGTATTAAGATTGGGATCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_172019 TraB-like protein [Arabidopsis thaliana] | 1512 | 2e-165 |
| XP_002892277 TraB family protein [Arabidopsis lyrata subsp. lyrata] | 1503 | 2e-164 |
| XP_002327843 predicted protein [Populus trichocarpa] | 1107 | 2e-118 |
| XP_002310462 predicted protein [Populus trichocarpa] | 1094 | 6e-117 |
| NP_180793 TraB family protein [Arabidopsis thaliana] | 1078 | 4e-115 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q58760 Uncharacterized protein MJ1365 | 287 | 9e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GXY6 At1g05270 | 1512 | 1e-165 |
| B9MXX1 Predicted protein (Fragment) | 1107 | 1e-118 |
| B9HHF3 Predicted protein | 1094 | 4e-117 |
| B7FA11 cDNA, clone: J100029H20, full insert sequence | 998 | 5e-106 |
| B8AZL1 Putative uncharacterized protein | 998 | 5e-106 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G05270.1 TraB family protein | 1513 | 6e-168 |
| AT2G32340.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 393 Blast hits to 393 proteins in 158 species: Archae - 68; Bacteria - 138; Metazoa - 89; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | 1078 | 2e-117 |
| AT5G52030.2 TraB protein-related | 189 | 2e-014 |
| AT5G52030.1 TraB protein-related | 189 | 2e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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