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Information for unigene UN12732

FASTA Sequence
Unigene ID: UN12732Length: 1214 SSR 
GGATCGATCTGCACAAATTACAAAATGATTCAGATTGGTACTTGCTTGAAATCGAGATTTTGAAGGGAAAAGAGCTTCTTCAAGGA
ACATTGAATCAAACCCAGCCCCAAATCTGAATCTACAAAGCTCTTTTACCTCACTGGGTATGTAGCCACCCCTCTCACTTTCTAAA
CTCCTCCCTTCTCCCTTAGGGTTTCCTCAAAACTCAGCCGCCTCTTACCTCATCCTCAGGGTTTTCCCCAAAATAAAAAATCGAAA
AAACCTAGTAACAAAGATGGAAGGAAGAAGGATCACAGCTAGCCCTAGACCTTGCAGCGGAAGAAGAGTCGTGGCGGCGGCGAAAA
AGAGGTCTCGTCCCGATGGGTTCGTCAACAGCGTTAAGAAGCTCCAGCGAAGAGAAATCTCGTCTCGTAAAGACCGAGCTTTCTCC
ATCAGCACCGCTCAGGAGAGATTCCGTAACATGCGTCTCGTGGAGCAATATGATACTCATGACCCCAAGGGACACTGTTTAGTTGC
GTTACCGTTTCTGATGAAGAGAACGTATCTGTGTGGAATTTTCGTGGAGAGCTCGTGACTTCCTTTGAGGATCATCTCCTATGGCA
TCCGGACTGTAACACAAACAATATCTACATAACAAGTGATCAAGATCTGATCATCTCCTATTGCAAAGCAGATACTGAAGATCAGT
GGATAGAAGGAAATGCGGGATCTATCAATATCAGCAACATATTGACTGGGAAATGCTTAGCTAAGATAACATCAAGCAGTGGACCT
CCAAAAGAAGATGAGAGCGGTAGTAGCAGTAGTTCCTTGGGGAACAACTCGAAGCTAAGAAGAAACGCTGTGGCTGAAGCTCTGGA
AGACATAACGGCTCTCTTCTATGATGAAGAGCGCAATGAGATATACACAGGAAACAGACACGGCTATGTTCATGTGTGGTCCAATT
GATTTCACATCATCATCATCATCATCATGTTAGCTACTTCAACTACTTCTACTGTGTTATTTGGTTTACTTCAATTGTGTGTGTAG
CGATCAATCTCTATTAACTTAGTGTCTTCCGAGCAGCCATTTGTGTTTGTTGTGAACTACGTTTGGGCATGTGTTTGTGATTCAGA
ATGCCAATTATGTACACTAGTGTCATTGTACGTAACATTTGGGTTTGATAAAGTCTATTGCAGACCCTTTATAAACTATTACATCT
TTGCAAGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877961 hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata]6742e-068
NP_566994 transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana]6662e-067
CAB70993 putative protein [Arabidopsis thaliana]6662e-067
NP_181397 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]6241e-062
AAC67355 unknown protein [Arabidopsis thaliana]6241e-062

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5G8 AT3g54190/F24B22_1506661e-067
Q9M387 Putative uncharacterized protein F24B22.1506661e-067
Q6RF50 Putative uncharacterized protein6241e-062
Q84J57 Putative uncharacterized protein At2g386306241e-062
Q9ZVI5 Putative uncharacterized protein At2g386306241e-062

Arabidopsis top hits (Blast detail)Scoree value
AT3G54190.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38630.1); Has 77 Blast hits to 77 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).6731e-070
AT2G38630.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54190.1); Has 79 Blast hits to 77 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).6353e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  50%
 
71  50%

Unigene MembersMember information