RadishBase

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Information for unigene UN12746

FASTA Sequence

Unigene ID: UN12746	Length: 931	SSR
GGGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGTGATTTTGAAATTAAATTTTCACTCTCCGACTACCTTATCCACCGGAGTTTCTT CTCCTACTGTCTATTCTCCTCGCAGGAGTTAACAGCTGTTCTCCGCACAATTCTTCAAGATGATTGGATCGTTTCTTACAAGAGGA TTGGTGATGTTGTTGGGTTATGCCTACCCTGCGTACGAATGCTACAAGACTGTTGAAAAGAACAGGCCTGAAATTGAGCAACTTCG CTTTTGGTGCCAGTACTGGATATTGGTTGCTTGTTTGACAGTCTTTGAGAGAGTTGGTGATGCCTTTGTTTCATGGGTTCCAATGT ACAGTGAAGCTAAGTTAGCATTCTTCATCTACCTGTGGTATCCTAAAACCAGGGGCACTACCTATGTCTACGAGTCTTTCTTTAGG CCATATCTCTCACAGCATGAGAATGACATTGACCATAGTTTGTTGGAGCTAAGGACAAGAGCTGGAGATATGGCTGTTGTATATTG GCAACGAGTTGCAAGCTATGGTCAGACCAGAATCTTTGAGATTCTCCAGTATGTTGCTGCACAATCAACTCCAAGGCCGCAACAAC CTCAGAAACGTGGAGGCAGAGCTAATCAAGTTCCTGTTAAGCCTAAGAAATCCCCTACCGTTCAACCAGAACCTGAAGAAGCAGCG TCGTCTAGCTCGTCTTCAAGCGACAGTGACGGTAATGATGCTACCAGTAAAGCAGCAGGCCCTTCAAAAGCTACTTCTGGACCAGC CACAGATGCCAAAACCCCGGGTATCACTCAGATAGTACAAAAGTTAGTCTCTTCTCCCAAACCCAATCAACCTCCCAAGTGGAAGC GGACCAATGCAGATAGAGAAGTGGAAGAGAGGGAAGCGGATCAGTGATGAAACGCGAACCCGAAGTCAAAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568606 HVA22-like protein i [Arabidopsis thaliana]	1047	9e-112
AAM62906 unknown [Arabidopsis thaliana]	1038	9e-111
BAB09327 unnamed protein product [Arabidopsis thaliana]	994	1e-105
NP_001078692 HVA22-like protein i [Arabidopsis thaliana]	994	1e-105
XP_002865508 abscisic acid-responsive HVA22 family protein [Arabidopsis lyrata subsp. lyrata]	925	1e-097

Swiss-Prot top hits (Blast detail)	Score	e value
Q8LE10 HVA22-like protein i	1047	4e-113
Q8LEM6 HVA22-like protein h	696	2e-072
Q9LR09 Putative HVA22-like protein g	592	2e-060
Q8GXE9 HVA22-like protein j	516	1e-051
O14355 Uncharacterized membrane protein C30D10.09c	172	1e-011

TrEMBL top hits (Blast detail)	Score	e value
Q1LYX3 At5g42560	1047	6e-112
A8MRL9 AT5G42560 protein	994	8e-106
B9GQW2 Predicted protein	806	5e-084
C6T7S4 Putative uncharacterized protein	732	2e-075
C6THW4 Putative uncharacterized protein (Fragment)	728	6e-075

Arabidopsis top hits (Blast detail)	Score	e value
AT5G42560.1 abscisic acid-responsive HVA22 family protein	1047	3e-114
AT5G42560.2 abscisic acid-responsive HVA22 family protein	994	5e-108
AT5G42560.3 abscisic acid-responsive HVA22 family protein	994	5e-108
AT1G19950.1 HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))	696	2e-073
AT1G75700.1 HVA22G (HVA22-LIKE PROTEIN G)	642	3e-067

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			50%


6	1			50%

Unigene Members	Member information