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Information for unigene UN12790
| FASTA Sequence |
| Unigene ID: UN12790 | Length: 815 |
SSR | | GGACACAAAAAAAAACATCTTTAGCAATCAAAGAAGAAGCCAAAAAAGAAGAAGAAGAAGAAGCCAAAGAAGAATACTTGAACTTG
AGAGATGGAGCACAGAAAGTCGTATGTGCTTGTCGCTCTCTTTGCACTGCTTCTCTTAACCGAAGTTGTTATTGCTGCCAGTGATG
GTGGGAAAGGCAACGGTAATAACGGCAACGGGCAAGTAGACAATGGTAATGGCAAAGGTAATGGTAACGGTAACGGTCCAAAGGAC
AAGGAAAAGAAGGACAAGGAGGATCAGAAAAAGAAGGACAAGGAAAGGAAGGATAAAGAGAAGAAGGACAAGGAAGAAAAGGCAAA
GAAGGAAAAAGAGAGGAAGGAGAAAGAGAAGAAGGACAAGGAGCAGAGTGAAGCGGCTGCAAGATACAAGATGCTCTCACCGTTGC
CCACAGGACAAGAGCAGGCCATGTGCCAGGGTCAGGGTGCATGTTATTACAAGACTCTTGCTTGTCCTGGTGAATGTCCCAAGAGG
AAGCCCGCCAAGAACAGAAACACTAAAGGTTGCTTCATTGACTGCACCAGCAAATGCGAAGCTACATGCAAATGGAGGAAACCAAA
CTGCAACGGGTACGGTTCTCTATGCTACGACCCTAGATTTGTCGGAGGAGATGGTAGGATGTTCTATTTCCATGGATCGAAAGGAG
GAACTTTGCCATCGTGTCAGACAACAACCTCCAGATCACGCTCACTTCATTGGTACTAGACCCGTTGGAGACCAGAGACTTCACAT
GGGTGCAAGCCCTAAATGTCATGTTCGAAACCACAAGCTCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200861 late embryogenesis abundant protein-like protein [Arabidopsis thaliana] | 698 | 2e-071 |
| AAL06922 AT5g60530/muf9_180 [Arabidopsis thaliana] | 698 | 2e-071 |
| XP_002530295 structural constituent of cell wall, putative [Ricinus communis] | 430 | 2e-040 |
| XP_002530294 structural constituent of cell wall, putative [Ricinus communis] | 422 | 2e-039 |
| XP_002313517 predicted protein [Populus trichocarpa] | 417 | 8e-039 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q869E1 DNA ligase 1 | 167 | 3e-011 |
| P22620 101 kDa malaria antigen | 156 | 6e-010 |
| P13816 Glutamic acid-rich protein | 147 | 7e-009 |
| P23746 101 kDa malaria antigen (Fragment) | 146 | 9e-009 |
| Q8I5D2 101 kDa malaria antigen | 145 | 1e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q940M3 AT5g60530/muf9_180 | 879 | 1e-092 |
| Q9FKJ4 At5g60530/muf9_180 | 879 | 1e-092 |
| B9SWC6 Structural constituent of cell wall, putative | 430 | 2e-040 |
| B9SWC5 Structural constituent of cell wall, putative | 422 | 1e-039 |
| B9HQA6 Predicted protein | 417 | 5e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G60530.1 late embryogenesis abundant protein-related / LEA protein-related | 879 | 9e-095 |
| AT5G60520.1 late embryogenesis abundant protein-related / LEA protein-related | 399 | 4e-039 |
| AT1G54890.1 late embryogenesis abundant protein-related / LEA protein-related | 236 | 3e-020 |
| AT5G54370.1 late embryogenesis abundant protein-related / LEA protein-related | 226 | 4e-019 |
| AT4G27400.1 late embryogenesis abundant protein-related / LEA protein-related | 208 | 5e-017 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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