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Information for unigene UN12792
| FASTA Sequence |
| Unigene ID: UN12792 | Length: 1362 |
SSR | | GCTCACGGAGTCGACCTCTCGCACGGAGACCATCAACGGCTCACACGAGTTCAAGATCAGCGGCTACTCTCTCGCCAAAGGGATGG
GGATAGGCAAGTACGTGGCTTCGGATACGTTCATGGTCGGTGGGTACTCGTGGGCGATCTACTTCTACCCGGATAACTCTGTCTAC
GTGTCTCTCTTCATAGCGCTCGCGAGCGAAGGAGCTGATGTTAGGGCTTTGTTTGAGCTGACACTTGTTGATCAGAGTGGTCATGA
GAGGCATAAGGTTCATAGCCATTTCGGTAGGACTCTTGAGAGCGGACCTTATACTCTTAAGTACCGAGGAAGTATGTGGGGATACA
AGCGGTTTTTCAAGAGGACTCTTCTGGAGTCATCAGATTATCTCAAGGACAATTGCCTCTTGGTGCGGTGCTGTGTGGGCGTGGTG
AAGTCACAAACAGAGGGACCGAGGAGTTACAATATCCCTGTGCCGGTTTCTGACTTGGGGCATCAGTTTGGAAAGCTTTTGGAGAG
TGGGAAGGGAGTTGATGTTACATTCCGAGTTGATGGAGAGACGTTTCCTGCTCACACGTTGGTTCTTGCAGCTCGTTCTCCAGTTT
TCAGGACACAGCTTTTTGGCCCGTTGAAAAACCAAAACACCAAAAGCATAATCATAGAAGACATGGAAGCTCCCATTTTCAAGATG
TTCCTCCATTTTATCTACTGGGACGAGTTGCCTGATATGGAAGACATAATGGGCACAGACTTGACTCTTGTGGCTCAGCATCTGCT
TGCAGCTGCAGACCGTTATGCTCTGGAGCGGCTTAGAACCATCTGCGAGTCAAAACTCTGTGAAGGAATCAGCATAAACACAGTAG
CGACCACCTTGGCTTTGGCAGAGCAGCATCATTGTTTCCAGCTAAAAGCTGCGTGTCTTAAATTCATAGCATTGCCACAAAGCCTG
AAAGCTGTGATGGAAACGGATGGGTTTGATTATCTGAAGGAAGGCTGCCCATGCTTACTAAGTGAGCTGCTGGAGTATGTGGCTAG
GCTGAGTGAGCACTCTTTAACATCATCGGGGAATAGGAAGGAGTTATATGCTGATGGTGGTGACGTGAATGGGAGACGAGTGAAGC
AGCGGTTGCACTAAGTAACTCACTTTCAGGGAGAGAGAGAGAGAGACTGATCACGTTGGAGGAGGCATCTTTGGGTAAACAGAATT
GTAGAAGAGTCGAGATTTGTTGTGCATTTGTCATTTGTAAAAGGATTAGTGATTGTTCCGTGTTGTCTAGCCAAGTAGAGTGACAT
GTTTTTTTTTGTATTTTTGTGCTTTTTTGATTGTATTGACTAAAGCCGCTTCTCTCAAGGAAAAGTTTCATG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884563 ATBPM2 [Arabidopsis lyrata subsp. lyrata] | 1744 | 2e-192 |
| NP_566275 BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] | 1739 | 9e-192 |
| XP_002871853 BTB-POZ and math domain 1 [Arabidopsis lyrata subsp. lyrata] | 1585 | 6e-174 |
| NP_197401 BTB-POZ and math domain-containing protein [Arabidopsis thaliana] | 1575 | 9e-173 |
| CBI32329 unnamed protein product [Vitis vinifera] | 1485 | 2e-162 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q717B2 TD and POZ domain-containing protein 2 | 320 | 1e-028 |
| Q6YCH1 TD and POZ domain-containing protein 5 | 265 | 3e-022 |
| Q7T330 Speckle-type POZ protein | 243 | 1e-019 |
| Q5BL35 Speckle-type POZ protein-like A | 242 | 1e-019 |
| Q6IQ16 Speckle-type POZ protein-like | 238 | 4e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M8J9 F28L1.13 protein | 1739 | 6e-192 |
| Q8L765 Putative uncharacterized protein At5g19000 | 1575 | 6e-173 |
| B9RSS8 Speckle-type POZ protein, putative | 1479 | 8e-162 |
| B9SFP2 Speckle-type POZ protein, putative | 1440 | 3e-157 |
| B9HY81 Predicted protein | 1423 | 3e-155 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G06190.1 BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding | 1767 | 2e-197 |
| AT5G19000.1 ATBPM1 (BTB-POZ and MATH domain 1); protein binding | 1595 | 2e-177 |
| AT2G39760.1 BPM3; protein binding | 1103 | 2e-120 |
| AT3G03740.1 ATBPM4 (BTB-POZ and MATH domain 4); protein binding | 1035 | 1e-112 |
| AT3G06190.2 BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding | 1033 | 2e-112 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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