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Information for unigene UN12830
| FASTA Sequence |
| Unigene ID: UN12830 | Length: 705 |
SSR | | GGAAAAACCCCAACTTTTACTAAATCACAGCTCAAACACTCTCTCTCTCTCTTTCTCTCTAGCTCCGATGGGCTTTCCCGTAGGCT
ACACAGAGGTCTTCCTCCCGAAGCTCTTCGTACAAACACTCTCAATACTCAGTTTCATCAGAACCCTCGTCTTCTCCCTCTTCAGC
TTCTTGGGCCTCTCCGACTGCCTCGAAACGGACCGAACCTGGCCCGACTACACGTCTTACCCGACCCGAGTACCCGAACTCCGCTC
TCCCTTCTCCGCCTTACTTATCCGCGAGATCTTACCAGTCATCAAGTTCGAAGACGTAACGAGCTCCTCCGGCGAAGATCTGCCGG
AAAGCTGCGCCGTCTGTCTCTACGAGTTCGAAGGAGAGCAAGAGATCCGACGGCTGAGAAACTGTCGGCATATATTCCCCCGGAGC
TGTTTCGACCGTTGGATGGATCACGACCAGAAGACGTGTCCTCTTTGCAGAACACCGTTTGTTCCAGAGGAGATGCAAGAAGAGTT
TAATCAACGGTTATGGGCTGCTTTTGGTGTTCCCGTGACGGAACTATAGAGATAATAAAGCTTTTGTGCCTCATGCTCCCTCCTTG
TGTCTTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTTGACTTTTCACCACTGTACTTTTGATTTTGCGTTTTTTCACCCTTGCTAAC
ATTAGATTTGCCACGCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191705 brassinosteroid-responsive RING-H2 [Arabidopsis thaliana] | 769 | 9e-080 |
| XP_002278353 PREDICTED: hypothetical protein [Vitis vinifera] | 586 | 1e-058 |
| XP_002320813 predicted protein [Populus trichocarpa] | 577 | 2e-057 |
| XP_002302597 predicted protein [Populus trichocarpa] | 563 | 7e-056 |
| XP_002511894 zinc finger protein, putative [Ricinus communis] | 553 | 1e-054 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LY41 RING-H2 finger protein ATL3J | 158 | 3e-010 |
| Q9P7E1 Uncharacterized RING finger protein P4H10.07 | 155 | 6e-010 |
| Q8L9T5 RING-H2 finger protein ATL3F | 145 | 9e-009 |
| Q9ZU51 RING-H2 zinc finger protein RHA2b | 140 | 4e-008 |
| Q940Q4 RING-H2 finger protein ATL4K | 137 | 8e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9XF92 BRH1 RING finger protein | 769 | 6e-080 |
| B9I8M9 Predicted protein | 577 | 1e-057 |
| B9GQB6 Predicted protein | 574 | 2e-057 |
| B9RDV5 Zinc finger protein, putative | 553 | 7e-055 |
| B9RCF4 Zinc finger protein, putative | 541 | 2e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding | 769 | 4e-082 |
| AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein | 422 | 7e-042 |
| AT5G41400.1 zinc finger (C3HC4-type RING finger) family protein | 291 | 1e-026 |
| AT4G00305.1 zinc finger (C3HC4-type RING finger) family protein | 222 | 1e-018 |
| AT2G04240.1 XERICO; protein binding / zinc ion binding | 168 | 2e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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