 |
Information for unigene UN12831
| FASTA Sequence |
| Unigene ID: UN12831 | Length: 1099 |
SSR | | GGGGAACAAAAATGGCGAATCTACATCCATCTCTCTCAATGGCCGGAGGAGCTCCGGCGAACAAAGATCGAAACTTGGCCTCCGCA
GAGCAGTTGGTTCTCGATCTCAGCAATCCCGAACTCAGAGAGAATGCTCTCCTCGAGCTTTCCAAGAAAAGAGAACTGTTTCAGGA
TCTGGCTCCTCTCTTGTGGAACTCTTTTGGTACCATTGCTGCTTTGTTGCAGGAGATAGTTTCGATCTACTCTGTTCTTGCACCTC
CAACCGTGTTTGCAATTCACTTGCCCTACTTCAGTGTGTAGCGTCTCATTCCGACACCAGAATGTTATTCCTCAAGGCTCACATCC
CATTGTACCTCTACCCCTTCCTTAATACAACCAGCAAGTCCAGACCTTTCGAGTACTTGCGCCTCACTAGCTTAGGTGTCATTGGT
GCACTTGTCAAGGTTGATGATACAGAGGTCATTAGCTTCCTTCTTTCAACCGAAATTATTCCTCTCTGCCTTCGCACCATGGAGAT
GGGGAGTGAGCTGTCCAAAACTGTTGGGACATTCATAGTTCAGAAGATCTTGTTGGATGATGTGGGGATGGATTACATTTGCACAA
CAGCAGAGCGTTTTTTTGCTGTTGGTCGAGTGTTGGGAAATATGGTTCAGTCGCTAGTGGAGCAGCCTTTTCCACGCCTTTTGAAG
CATATCATTCGTTGTTACCTCCGTTTATCAGTCAACCCAAGGGCTTGTGCTGCACTCGGAAGCTGCCTCCCTGACTCTTTACGAGA
TGGAACCTTCAGCAATTGTTTTCGGGAGGATCAAATAGCAAGGAGGTGGCTGCAACAGTTGGTTCACAATGTTGGAGTTGGTCGAG
TCCCAACACATCAAGGTGGAGGATTTGAGCACATGCTTTGATTTGAATGCATTTCAGCCTATTTCCTATGGAGTGTTTCCTTTTGT
TTTTGTTTTCTTTTAATTTATTTTTGTGCTTTTGATGCCTTGACTTAGATGATGATGATGATGATGAGTTATAGGCTTTTTAATCT
GTTTGAAATTCTTATTGTAATTATTTTATTAAACATTAGAACGCGCTCGATATAAAGGAATGTTTAC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885405 hypothetical protein ARALYDRAFT_479606 [Arabidopsis lyrata subsp. lyrata] | 1066 | 7e-114 |
| BAB02488 RCD1 [Arabidopsis thaliana] | 1062 | 2e-113 |
| NP_188716 CCR4-NOT transcription complex subunit 9 [Arabidopsis thaliana] | 1062 | 2e-113 |
| AAM61591 putative cell differentiation protein [Arabidopsis thaliana] | 1057 | 8e-113 |
| XP_002317325 predicted protein [Populus trichocarpa] | 952 | 1e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A7MB47 Cell differentiation protein RCD1 homolog | 716 | 1e-074 |
| Q92600 Cell differentiation protein RCD1 homolog | 716 | 1e-074 |
| Q4R347 Cell differentiation protein RCD1 homolog | 716 | 1e-074 |
| Q9JKY0 Cell differentiation protein RCD1 homolog | 716 | 1e-074 |
| Q5R6Z6 Cell differentiation protein RCD1 homolog | 716 | 1e-074 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RWV5 Putative cell differentiation protein | 1062 | 1e-113 |
| Q9LT41 RCD1 | 1062 | 1e-113 |
| Q8LF62 Putative cell differentiation protein | 1057 | 5e-113 |
| B9I150 Predicted protein | 952 | 8e-101 |
| B9STZ0 Cell differentiation protein rcd1, putative | 946 | 4e-100 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G20800.1 rcd1-like cell differentiation protein, putative | 1063 | 6e-116 |
| AT5G12980.1 rcd1-like cell differentiation protein, putative | 859 | 3e-092 |
| AT2G32550.1 rcd1-like cell differentiation family protein | 290 | 3e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
