RadishBase

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Information for unigene UN12847

FASTA Sequence

Unigene ID: UN12847	Length: 1106	SSR
GGACAGACTGTTGTTTTGGTTCCTACTGATATTGGTGTTGTTGAGTTGGGCTCTACTTCTTGTTTGCCTCATAGTGATGACTCTAT CTCCTCTATAAGATCTTCCTTTTCCTCTCCTCCTCCTCCTCCTCCTCCTCCGGTTAGAGTTGTTTTGCCTGTCGTTGTGGCTGATG ACAACAGTTCCTCCAAGATATTCGGCAGAAGCTCCTAGCAGGGAAGATTTCAAGTTTCTCCCTTTGCAGCAATCATCATCATCGTC TCATAGGCTGCTTCCTCCTGCTCAGATGCAGATTGATTTCTCCGGTGCGAGTTCAAGGGCTTCTGAGACTAATTCAGATGGTGGAG GAACTGAATGGGGTGACCTTGTTGGTGGTACTGATGAATCTGGTGGTGACAACAGACCGAGGAAACGAGGAAGGAGACCTGCCAAC GGAAGAGTAGAAGCTCTCAACCACGTGGAAGCCGAGAGGCAACGGCGTGAGAAGCTTAACCAGAGGTTTTACGCCCTCAGATCAGT TGTCCCCAACATTTCCAAGATGGACAAAGCCTCCTTTTTGGGAGACGCCGTCTCTTACATTAACGAGCTTTACGCTAAGCTCAAGG TTATGGAAGCTGAGAGAGAGAGGTTAGGTTACAGCTTTAATCCTCATTTTTGCTTGGAGCAGCCGGGGATTAACGTTCAGACAGCA GGTGAAGACGTGGCAGTGACTGTTAGCTGTCCGTTGGATTTTCATCCGGCATCAAGAATCTTCCATGCGTTTGAAGAGGCTAAAGT AGAAGTGATTAACTCAAAACTGGAAGTTCCACAGGACATAGTGTTGCATACGTTTGTGATCAAATTTGAAGAGGTGACTAAAGAGA AGCTCATCTCGGCTCTCTCTAGAGAGCAGTCCAGTTCTGTTCAGTCGAGAACATCATCAGGTAGATAGCCTTTTGAGAGTGACAAG AAGAAGTTTGTAGTGAAGAAGAACCCTGTAACAATCCTCCAGGCTAGGATTTTAGAAGTTTTTTTTTTTATTTATTTGTCAAAAGT AGACAACTCGCTTTACAAGAAAAAAAAATAGCATCTATTTATTATGTTGAAGAAGCCTTTGGGACTTGCTTGAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ34417 unnamed protein product [Thellungiella halophila]	960	1e-101
NP_171634 transcription factor bHLH13 [Arabidopsis thaliana]	943	1e-099
AAM10932 putative bHLH transcription factor [Arabidopsis thaliana]	943	1e-099
BAH20404 AT1G01260 [Arabidopsis thaliana]	943	1e-099
XP_002892077 basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]	941	2e-099

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LNJ5 Transcription factor bHLH13	943	6e-101
Q9ZPY8 Transcription factor ABA-INDUCIBLE bHLH-TYPE	483	1e-047
O23487 Transcription factor bHLH3	403	2e-038
Q9FIP9 Transcription factor ATR2	312	8e-028
O49687 Transcription factor MYC4	309	2e-027

TrEMBL top hits (Blast detail)	Score	e value
B9DI37 AT1G01260 protein (Fragment)	943	9e-100
A6NAB4 Myc2 bHLH protein	543	2e-053
C5XJK2 Putative uncharacterized protein Sb03g000570	476	1e-045
B7ZXC6 Putative uncharacterized protein	469	8e-045
A2XQC5 Putative uncharacterized protein	467	1e-044

Arabidopsis top hits (Blast detail)	Score	e value
AT1G01260.1 basic helix-loop-helix (bHLH) family protein	944	4e-102
AT1G01260.2 basic helix-loop-helix (bHLH) family protein	944	4e-102
AT2G46510.1 ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR); DNA binding / transcription factor	483	1e-048
AT4G16430.1 basic helix-loop-helix (bHLH) family protein	403	2e-039
AT5G46760.1 basic helix-loop-helix (bHLH) family protein	312	7e-029

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information