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Information for unigene UN12852

FASTA Sequence
Unigene ID: UN12852Length: 1152 SSR 
GGATATCAAAATCAAATTCCTATATATATAAAAACAAAAATCTCTAAAGGAAAGGGCTTTACCACTTCCCTCTGTATAATCTCTCT
CTGTTTTCCCCTGTTTTTGATTAGATTCAGAGAAGAAGAAGAAGATGGGGAGAGGAAGGATAGAGATAAAGAAGATTGAGAATGTG
AACAGTCGTCAAGTCACTTTCTCCAAGAGACGTAATGGGCTGATGAAGAAGGCCAACGAGCTTTCCATCCTCTGCGACGCCGAGGT
CGCCGTCATCGTCTTCTCCAGCACCGGCAAGGCTTACGATTTCTCCAGCGGAAGTATGGAGCACATTCTCTCTAGATATGGATACA
GTGCTGTGACGGCTGGTCATAGACAAAGAGAAGAAGGCCAACAACTTCTACTTTGTTCTTCTTCTTCTCAAGAAAATGGCGATGTG
TTGCGGACAGATGAATCTTTGAGGAGTGAACTTGAGAGATTACAGCTTGCAATTGAGAGGCTCAAGGGTAAGGAGCTTGAGGGTAT
GAGTTTCTCGGATCTTGTTTCTCTTGAAGACACGCTAAATGATAGCTTGCATAGCGTCAAGGATCGAAAGACACAAATCCTGCTCA
ATCAGGTGGAAAGATCCAGGTTACAGGAGAAGAGAGCATTGGAAGAGAACCAGCTTTTGCGCAAACAGATAGAGTTGTTTGGATCA
GGACCCAAACCGCTGAGTGAAATAACTCCATTCTCTAGCCCGCAAGAAGAGCCTGAGAGCTCTTCATCAGACGACGATGACGAAAA
TGACAATGAGGAGCTGCAGTCCAACACTTCCTTGCAGTTGGGGTTGGCTTCATCAGCGTACTTTGCAAAGAGAAAGAAGCCAAAGA
TTGAACCTCTCTGCGACAACTCTGGAAGTCAAGTGGCTTCTGATTGATCAATTAGTATTTTCCTAGTTATGGTGTTTAGTAGAGGT
TTTATTGTGCATTCTCCTTTTGTTTCATGCCTGGTCTTTTGGTGTACATCGTATCAAGTAGAGTTTTATGTTCTTAGGTAATCAAA
TGTTAGTTTCTCTTGTTAAAAGTTTCTAACAGAGAAGAAACAGAAGTTGAGAATGAATCAGGACAAGAAACTTGCATCCAGTTTTT
TTATTTCACTTCTAAAAGAAGGGTAAATTGTTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191298 protein agamous-like 18 [Arabidopsis thaliana]9206e-097
AAM65178 MADS transcription factor-like protein [Arabidopsis thaliana]9143e-096
NP_974450 protein agamous-like 18 [Arabidopsis thaliana]6446e-065
XP_002876415 hypothetical protein ARALYDRAFT_486183 [Arabidopsis lyrata subsp. lyrata]6446e-065
BAD93735 MADS transcription factor-like protein [Arabidopsis thaliana]5532e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q9SZJ6 Agamous-like MADS-box protein AGL213342e-030
Q2QW53 MADS-box transcription factor 132894e-025
Q38847 Agamous-like MADS-box protein AGL152733e-023
Q39295 Agamous-like MADS-box protein AGL152681e-022
Q6VAM4 MADS-box transcription factor 232563e-021

TrEMBL top hits (Blast detail)Scoree value
Q9M2K8 MADS transcription factor-like protein9204e-097
Q8LAS6 MADS transcription factor-like protein9142e-096
Q3EAI4 At3g573906444e-065
Q570M9 MADS transcription factor-like protein5532e-054
Q6UGQ9 MADS-box protein 94894e-047

Arabidopsis top hits (Blast detail)Scoree value
AT3G57390.1 AGL18; transcription factor9212e-099
AT3G57390.2 AGL18; transcription factor6452e-067
AT2G14210.1 AGL44 (AGAMOUS-LIKE 44); DNA binding / transcription factor3441e-032
AT4G37940.1 AGL21; transcription factor3342e-031
AT5G13790.1 AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor2733e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  100%

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