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Information for unigene UN12871
| FASTA Sequence |
| Unigene ID: UN12871 | Length: 1081 |
SSR | | GGAAAACCACCACCACCACCAACCACATCCTGTGAAACCCTAGCCACACCACCAATCGCCGCCTACTCTTCCATCTACACCAGATT
TGGGATGAAACCGGATCGGGTCTACCTCTAGATCCGTTCTAGGTTTTTTTCTTTAGATTCTTCAAATCCAGATGCCCCCGAGATTC
ATCATCATAACACATAAAAGCCACGAACCATGTCTCTGTTTCTAAAAGACGATTCGATCCAAATCCGGGAAGTGTGGAGCGATAAC
CTGCAGGAGGAGATGGATCTGATCCGAGGAGTCGTTGACGATTTCCCTTACGTGGCCATGGACACGGAGTTCCCCGGAATCGTCGT
CCGCCCCGTCGGTACCTTCAAATCGAACGCCGATTACCACTACGAGACCCTCAAGCTCAACGTCAACATCCTCAACATCATCCAGC
TCGGCCTCACCTTCTCCAACGAGCAAGGCGACCTCCCCACCTGCGACAACGACAACAAGTACTGCATCTGGCAGTTCAACTTCCGC
GAGTTCGACCTCGACTCCGACATCTTCGCCGTCGACTCCATCGACCTCCTCAAGCAATCCGGCATCGACTTCGCCAAGAACACCCG
GGAAGGCATCGAGTCGAGGCGATTCGCTGAGCTGCTCATGTCCTCGGGGATCGTGCTCAACGAGAACGTGCACTGGGTCACCTTCC
ACAGCGGTTACGACTTCGGGTACCTGCTCAAGCTCCTCACGTGCCAGAACCTTCCCGATTCTCAGACCAGCTTCTTCGAGCTCATC
AACGTTTATTTCCCGATGGTGTACGATATAAAGCACCTGATGAAGTTCTGTAACAGCCTTCACGGGGGGCTGAACAAGCTGGCGGA
GTTGCTGGAGGTGGAGAGAGTTGGGATCTGTCACCAGGCGGGGTCCGATAGTTTGCTCACCTCTTGTACTTTCAGAAAGCTTAAGG
AGAATTTCTTCGTTGGTCCCTTGCAGAAATATGCTGGTGTTTTGTATGGCTTAGGTGTTGAAAATGGTCAGGTTGCTCTCTAATAT
CTTTATTAATTAAAAAATAGTAAGAAAATTTCAAATAAAAAGTTCCTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_178193 putative CCR4-associated factor 1-6 [Arabidopsis thaliana] | 1331 | 1e-144 |
| NP_001185452 putative CCR4-associated factor 1-6 [Arabidopsis thaliana] | 1310 | 3e-142 |
| XP_002881215 hypothetical protein ARALYDRAFT_902256 [Arabidopsis lyrata subsp. lyrata] | 1262 | 1e-136 |
| NP_565735 putative CCR4-associated factor 1-7 [Arabidopsis thaliana] | 1258 | 4e-136 |
| XP_002272209 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 1166 | 2e-125 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SAI2 Probable CCR4-associated factor 1 homolog 6 | 1336 | 1e-146 |
| Q9SKZ2 Probable CCR4-associated factor 1 homolog 7 | 1258 | 2e-137 |
| Q9LEU4 Probable CCR4-associated factor 1 homolog 10 | 967 | 9e-104 |
| Q9S9P2 Probable CCR4-associated factor 1 homolog 2 | 862 | 1e-091 |
| Q3ZC01 CCR4-NOT transcription complex subunit 7 | 770 | 6e-081 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GMB8 Predicted protein | 1158 | 1e-124 |
| B9SMT7 Ccr4-associated factor, putative | 1157 | 1e-124 |
| B9GVJ6 Predicted protein | 1140 | 1e-122 |
| C6TNY2 Putative uncharacterized protein | 1139 | 2e-122 |
| C6TGJ0 Putative uncharacterized protein | 1115 | 1e-119 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G80780.1 CCR4-NOT transcription complex protein, putative | 1337 | 1e-147 |
| AT1G80780.2 CCR4-NOT transcription complex protein, putative | 1337 | 1e-147 |
| AT2G32070.1 CCR4-NOT transcription complex protein, putative | 1258 | 1e-138 |
| AT5G10960.1 CCR4-NOT transcription complex protein, putative | 967 | 8e-105 |
| AT1G15920.2 CCR4-NOT transcription complex protein, putative | 862 | 1e-092 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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