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Information for unigene UN12881
| FASTA Sequence |
| Unigene ID: UN12881 | Length: 1383 |
SSR | | GGGAACAAAGAGAGAGAGAGAGAGCAGAGGAAACAACCTCGAAGCTTGAAGGAGTTACCATGGAAGCTCTTATTGCTTCCGCTTCC
GCTTCCGCTTCCTTCTTCCTCCCCATCTGCAACTCTTCCTCATACAACCGACTCTTCCCTTGTTCGTCTTATTCTCCCAACATAAA
TTTCGGAACTTTTCGGAAGAATCATCTCTCTTTCTCATCACACCTTGTATACTCCTCCTCTGCAGTATCCGCACCGTCGTCTTCTA
CTACTCTCTCCCTAAACACCTACTGGATGGTAATTTTGGATAAACCTCCACAAAGGGTTTCTTCAAAATCCGATATTGTAGACTAC
TATGTCCAGATTCTTGCGAAAGTGTTGGGAAACGAAAAGGATGCGCAGATGAGTATATATGATGCTTCCTTTGATACCCATTTTGG
GTTTTGTTGTCATATCGACGAAGATGCTTCACGCCATCTCGCTCGCTTGCGTGAAGTATTATCTGTTAGACCTGAAGCTGATTACA
GTTCCGGGAATAAGAATTATGGCATTGGGAACCAGACAGGTGTTTCCTTGTTTGATCATGGGAGAGTGAAACATTGGATGGTCCGG
ATAGACAAGCCAGGAGTTGGGATTGTTACTAAAGCACAGATGGTTGATCATTGTGTTCAGTTGTTATCCAAGGTTTTGTGGAATGA
AAAGGATGCACAGATGTGTCTTTATCATGTTTCTTGGCAGTCCAAATACGGTTTTTGCTGTGATCTGGATGAAAAATGCGCTGAAG
AGTTGGCTGGTGTACCTGGTGTTCTTGCTGTTGTCCCGGATAACAATTTTGAGTCACTAAACAAAGACTATGAAGGTGATAATAGT
AGACAAGATTCAAGGGAAAGTTCAGAGTCTCCTCCTGTTAAGACGAAGAAGCTGTTTATAACGGGACTGTCTTTCTACACATCTGA
GAAGACATTGCGTGCAGCCTTTGAAGGATTCGGTGAACTAGTGGAAGTAAAAATAATAATGGACAAGATATCAAAGAGATCAAAAG
GTTATGCCTTTATAGAGTACACAACAGAGGAAGCTGCAAGCGTTGCACTAAAAGAGATGAATGGAAAGATTATTAACGGGTGGATG
ATAGTGGTAGATGTAGCCAAGACCAAACCGTTCAGACACAACAGAAGAGAGACGAGTTCTTCTGAGTTGTAGAAACTAGTTGAAAA
GTGACAAAGCTGATGCTTTTTTTGTTCATCCATATGTCTATGAGATGATGTATAATTTAGAATTTGCTGCTTGTAACGACCATATG
TAAAGGCTTTGATTGGTAACACTAGAATAATTGCGGAATTGCGGAAAATTAACTGTTTTGCTGAATAAAAGTTGTGGAATTTAAAA
TTTGCCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566672 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1554 | 3e-170 |
| XP_002883278 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | 1525 | 6e-167 |
| BAB01902 unnamed protein product [Arabidopsis thaliana] | 1447 | 6e-158 |
| XP_002315444 predicted protein [Populus trichocarpa] | 1063 | 2e-113 |
| NP_001159310 hypothetical protein LOC100304402 [Zea mays] | 888 | 4e-093 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial | 181 | 2e-012 |
| P98179 Putative RNA-binding protein 3 | 170 | 3e-011 |
| Q38732 DAG protein, chloroplastic | 168 | 6e-011 |
| Q28IQ9 Cold-inducible RNA-binding protein | 166 | 9e-011 |
| O75526 RNA-binding motif protein, X-linked-like-2 | 162 | 3e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L440 Putative uncharacterized protein | 1554 | 2e-170 |
| Q9LIH1 Genomic DNA, chromosome 3, P1 clone:MFD22 | 1447 | 4e-158 |
| B9HVY6 Predicted protein | 1063 | 1e-113 |
| C0HFE5 Putative uncharacterized protein | 888 | 3e-093 |
| B8AI14 Putative uncharacterized protein | 877 | 5e-092 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G20930.1 RNA recognition motif (RRM)-containing protein | 1554 | 9e-173 |
| AT1G73530.1 RNA recognition motif (RRM)-containing protein | 227 | 7e-019 |
| AT1G32580.1 plastid developmental protein DAG, putative | 216 | 1e-017 |
| AT2G33430.1 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) | 207 | 1e-016 |
| AT2G35240.1 plastid developmental protein DAG, putative | 194 | 5e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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