RadishBase

| | | |

Information for unigene UN12898

FASTA Sequence

Unigene ID: UN12898	Length: 1348	SSR
GGTCTCTCATCTTCTTCTTCGTCTCCGTCTCTCTCAGAATGCTCATCAGATATAATCTCCTTTTCGTTTCCTTGATGTGTTTTCTC TTCTAATCTCCGTCGAGAGAGAAACCAAAACCAAAACAAAAAACAGAGGAGAGAAAGAGAGAGTGAAGCTAATCCATGGCCGCCGC CGCCGCCGCCGCTATAACAGAGAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAAGCTCTCCAGAATCCTCGTCATCGTCTCACCA TTTTACGGATGGAGCTCGATATACAAAAGTTCTTCCAAAACCCCGAGCAGCTTCAGTTCGAGTTCTCTCCTTTCCCGACGTCTTAC CTTCGTCTCGCCGCACATCGGGTCGCGCAGCACTATGGTTTGGTGACCATGGCTTTGGACAACGGTGGTGGCGCAGTGGATGGATC AGACAACAGGATCCTGGCGACCAAGACAGCTGAGAGTAGGTTTCCTTGCGTCTGCTTGTCCGAAATCCCTGTTAAGCAACCCGAGA GCGGTAGACCCGAGGGTTTCAAGATTGCGATCAAGGCGAGACCCAAGAGAGGATCCGGCTCCGGAGGTAGCGGGTCTGGAGTGCAG CAGAATCTTCAGAGAAGTGTTGAGGAGAGGAAAGAGGAGTATGATAAAGCTAGGGCTCGGATCTTTAACAGCCCTGGTAGTTCCGA CTCTGAAGATTCTTCGTCGCTACGAGCTCCTCCTCTTACTCCTCCTCCTGAAGTGAAAAACGCGAGTGTAAACCGCAGTGAGGCTG AGGTGGCGGTCAGTAATAATTCTCTTGATGCTGGTGGTGGTTCTCGAGAATCTGGAAGGACCTCTATAGCCATCATCAGAGATAGG GAGAAAGATCGTTATGATCCTGATTATGACAGGAGCTATGACAGGTATGTCGTGGATCCAGCCTACAGGTACGTTAGGGTTATGCC GTCTGGCCAAGGCTTCAATCCGATGCCTCTCCACATTCCGTTTCACGATGGAGGTTTCCCGCAGATGCCAAGAGGTCATCAAGCTC ATCTAAACTACGGGCATCATCCGCTAAACCCTGCTATGAGTCCCTTTATTAATCACCCGGCTGCTTACACACCGTGGCCAAACTCG CCAGCTATGAACTATGCGCATTCGTTGAACGGCCCAGACACAAATCTTTTCAGGCATCCTTTTGCGAGCAATCCCTGACGACAAGT AGTGTTTTGAGTACTTCAATGTTTGTATGAAAGTTTTTTAAAAAAAAAGAAATAGATTCTATAGATATTTAGCCTTTAGGAGCTCT CTGTTCTGTTCCAAACAATGGCTGCTGCTTTCTTATATAACAAGACATCTTCTTTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884813 nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]	1478	2e-161
NP_566381 Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]	1453	1e-158
AAM64684 unknown [Arabidopsis thaliana]	1448	5e-158
BAB11532 unnamed protein product [Arabidopsis thaliana]	1056	1e-112
NP_568149 Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]	1042	6e-111

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q9SG83 Putative uncharacterized protein At3g10770	1453	9e-159
Q8LBM0 Putative uncharacterized protein	1448	3e-158
Q9FF64 Gb\|AAF19572.1	1056	9e-113
Q93YN3 Putative uncharacterized protein At5g05100	1042	4e-111
Q3EB95 Putative uncharacterized protein At3g10770.2	1040	7e-111

Arabidopsis top hits (Blast detail)	Score	e value
AT3G10770.1 nucleic acid binding	1461	5e-162
AT3G10770.2 nucleic acid binding	1398	1e-154
AT5G05100.1 nucleic acid binding	1048	4e-114
AT2G40960.1 nucleic acid binding	710	7e-075
AT3G56680.1 nucleic acid binding	676	6e-071

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			33%


8	2			67%

Unigene Members	Member information